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Plastic-Degrading Potential across the Global Microbiome Correlates with Recent Pollution Trends
Biodegradation is a plausible route toward sustainable management of the millions of tons of plastic waste that have accumulated in terrestrial and marine environments. However, the global diversity of plastic-degrading enzymes remains poorly understood. Taking advantage of global environmental DNA...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Society for Microbiology
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8546865/ https://www.ncbi.nlm.nih.gov/pubmed/34700384 http://dx.doi.org/10.1128/mBio.02155-21 |
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author | Zrimec, Jan Kokina, Mariia Jonasson, Sara Zorrilla, Francisco Zelezniak, Aleksej |
author_facet | Zrimec, Jan Kokina, Mariia Jonasson, Sara Zorrilla, Francisco Zelezniak, Aleksej |
author_sort | Zrimec, Jan |
collection | PubMed |
description | Biodegradation is a plausible route toward sustainable management of the millions of tons of plastic waste that have accumulated in terrestrial and marine environments. However, the global diversity of plastic-degrading enzymes remains poorly understood. Taking advantage of global environmental DNA sampling projects, here we constructed hidden Markov models from experimentally verified enzymes and mined ocean and soil metagenomes to assess the global potential of microorganisms to degrade plastics. By controlling for false positives using gut microbiome data, we compiled a catalogue of over 30,000 nonredundant enzyme homologues with the potential to degrade 10 different plastic types. While differences between the ocean and soil microbiomes likely reflect the base compositions of these environments, we find that ocean enzyme abundance increases with depth as a response to plastic pollution and not merely taxonomic composition. By obtaining further pollution measurements, we observed that the abundance of the uncovered enzymes in both ocean and soil habitats significantly correlates with marine and country-specific plastic pollution trends. Our study thus uncovers the earth microbiome's potential to degrade plastics, providing evidence of a measurable effect of plastic pollution on the global microbial ecology as well as a useful resource for further applied research. |
format | Online Article Text |
id | pubmed-8546865 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | American Society for Microbiology |
record_format | MEDLINE/PubMed |
spelling | pubmed-85468652021-11-04 Plastic-Degrading Potential across the Global Microbiome Correlates with Recent Pollution Trends Zrimec, Jan Kokina, Mariia Jonasson, Sara Zorrilla, Francisco Zelezniak, Aleksej mBio Research Article Biodegradation is a plausible route toward sustainable management of the millions of tons of plastic waste that have accumulated in terrestrial and marine environments. However, the global diversity of plastic-degrading enzymes remains poorly understood. Taking advantage of global environmental DNA sampling projects, here we constructed hidden Markov models from experimentally verified enzymes and mined ocean and soil metagenomes to assess the global potential of microorganisms to degrade plastics. By controlling for false positives using gut microbiome data, we compiled a catalogue of over 30,000 nonredundant enzyme homologues with the potential to degrade 10 different plastic types. While differences between the ocean and soil microbiomes likely reflect the base compositions of these environments, we find that ocean enzyme abundance increases with depth as a response to plastic pollution and not merely taxonomic composition. By obtaining further pollution measurements, we observed that the abundance of the uncovered enzymes in both ocean and soil habitats significantly correlates with marine and country-specific plastic pollution trends. Our study thus uncovers the earth microbiome's potential to degrade plastics, providing evidence of a measurable effect of plastic pollution on the global microbial ecology as well as a useful resource for further applied research. American Society for Microbiology 2021-10-26 /pmc/articles/PMC8546865/ /pubmed/34700384 http://dx.doi.org/10.1128/mBio.02155-21 Text en Copyright © 2021 Zrimec et al. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Research Article Zrimec, Jan Kokina, Mariia Jonasson, Sara Zorrilla, Francisco Zelezniak, Aleksej Plastic-Degrading Potential across the Global Microbiome Correlates with Recent Pollution Trends |
title | Plastic-Degrading Potential across the Global Microbiome Correlates with Recent Pollution Trends |
title_full | Plastic-Degrading Potential across the Global Microbiome Correlates with Recent Pollution Trends |
title_fullStr | Plastic-Degrading Potential across the Global Microbiome Correlates with Recent Pollution Trends |
title_full_unstemmed | Plastic-Degrading Potential across the Global Microbiome Correlates with Recent Pollution Trends |
title_short | Plastic-Degrading Potential across the Global Microbiome Correlates with Recent Pollution Trends |
title_sort | plastic-degrading potential across the global microbiome correlates with recent pollution trends |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8546865/ https://www.ncbi.nlm.nih.gov/pubmed/34700384 http://dx.doi.org/10.1128/mBio.02155-21 |
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