Cargando…

Plastic-Degrading Potential across the Global Microbiome Correlates with Recent Pollution Trends

Biodegradation is a plausible route toward sustainable management of the millions of tons of plastic waste that have accumulated in terrestrial and marine environments. However, the global diversity of plastic-degrading enzymes remains poorly understood. Taking advantage of global environmental DNA...

Descripción completa

Detalles Bibliográficos
Autores principales: Zrimec, Jan, Kokina, Mariia, Jonasson, Sara, Zorrilla, Francisco, Zelezniak, Aleksej
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Society for Microbiology 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8546865/
https://www.ncbi.nlm.nih.gov/pubmed/34700384
http://dx.doi.org/10.1128/mBio.02155-21
_version_ 1784590276643258368
author Zrimec, Jan
Kokina, Mariia
Jonasson, Sara
Zorrilla, Francisco
Zelezniak, Aleksej
author_facet Zrimec, Jan
Kokina, Mariia
Jonasson, Sara
Zorrilla, Francisco
Zelezniak, Aleksej
author_sort Zrimec, Jan
collection PubMed
description Biodegradation is a plausible route toward sustainable management of the millions of tons of plastic waste that have accumulated in terrestrial and marine environments. However, the global diversity of plastic-degrading enzymes remains poorly understood. Taking advantage of global environmental DNA sampling projects, here we constructed hidden Markov models from experimentally verified enzymes and mined ocean and soil metagenomes to assess the global potential of microorganisms to degrade plastics. By controlling for false positives using gut microbiome data, we compiled a catalogue of over 30,000 nonredundant enzyme homologues with the potential to degrade 10 different plastic types. While differences between the ocean and soil microbiomes likely reflect the base compositions of these environments, we find that ocean enzyme abundance increases with depth as a response to plastic pollution and not merely taxonomic composition. By obtaining further pollution measurements, we observed that the abundance of the uncovered enzymes in both ocean and soil habitats significantly correlates with marine and country-specific plastic pollution trends. Our study thus uncovers the earth microbiome's potential to degrade plastics, providing evidence of a measurable effect of plastic pollution on the global microbial ecology as well as a useful resource for further applied research.
format Online
Article
Text
id pubmed-8546865
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher American Society for Microbiology
record_format MEDLINE/PubMed
spelling pubmed-85468652021-11-04 Plastic-Degrading Potential across the Global Microbiome Correlates with Recent Pollution Trends Zrimec, Jan Kokina, Mariia Jonasson, Sara Zorrilla, Francisco Zelezniak, Aleksej mBio Research Article Biodegradation is a plausible route toward sustainable management of the millions of tons of plastic waste that have accumulated in terrestrial and marine environments. However, the global diversity of plastic-degrading enzymes remains poorly understood. Taking advantage of global environmental DNA sampling projects, here we constructed hidden Markov models from experimentally verified enzymes and mined ocean and soil metagenomes to assess the global potential of microorganisms to degrade plastics. By controlling for false positives using gut microbiome data, we compiled a catalogue of over 30,000 nonredundant enzyme homologues with the potential to degrade 10 different plastic types. While differences between the ocean and soil microbiomes likely reflect the base compositions of these environments, we find that ocean enzyme abundance increases with depth as a response to plastic pollution and not merely taxonomic composition. By obtaining further pollution measurements, we observed that the abundance of the uncovered enzymes in both ocean and soil habitats significantly correlates with marine and country-specific plastic pollution trends. Our study thus uncovers the earth microbiome's potential to degrade plastics, providing evidence of a measurable effect of plastic pollution on the global microbial ecology as well as a useful resource for further applied research. American Society for Microbiology 2021-10-26 /pmc/articles/PMC8546865/ /pubmed/34700384 http://dx.doi.org/10.1128/mBio.02155-21 Text en Copyright © 2021 Zrimec et al. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Research Article
Zrimec, Jan
Kokina, Mariia
Jonasson, Sara
Zorrilla, Francisco
Zelezniak, Aleksej
Plastic-Degrading Potential across the Global Microbiome Correlates with Recent Pollution Trends
title Plastic-Degrading Potential across the Global Microbiome Correlates with Recent Pollution Trends
title_full Plastic-Degrading Potential across the Global Microbiome Correlates with Recent Pollution Trends
title_fullStr Plastic-Degrading Potential across the Global Microbiome Correlates with Recent Pollution Trends
title_full_unstemmed Plastic-Degrading Potential across the Global Microbiome Correlates with Recent Pollution Trends
title_short Plastic-Degrading Potential across the Global Microbiome Correlates with Recent Pollution Trends
title_sort plastic-degrading potential across the global microbiome correlates with recent pollution trends
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8546865/
https://www.ncbi.nlm.nih.gov/pubmed/34700384
http://dx.doi.org/10.1128/mBio.02155-21
work_keys_str_mv AT zrimecjan plasticdegradingpotentialacrosstheglobalmicrobiomecorrelateswithrecentpollutiontrends
AT kokinamariia plasticdegradingpotentialacrosstheglobalmicrobiomecorrelateswithrecentpollutiontrends
AT jonassonsara plasticdegradingpotentialacrosstheglobalmicrobiomecorrelateswithrecentpollutiontrends
AT zorrillafrancisco plasticdegradingpotentialacrosstheglobalmicrobiomecorrelateswithrecentpollutiontrends
AT zelezniakaleksej plasticdegradingpotentialacrosstheglobalmicrobiomecorrelateswithrecentpollutiontrends