A bioinformatics pipeline for Mycobacterium tuberculosis sequencing that cleans contaminant reads from sputum samples

Next-Generation Sequencing (NGS) is widely used to investigate genomic variation. In several studies, the genetic variation of Mycobacterium tuberculosis has been analyzed in sputum samples without previous culture, using target enrichment methodologies for NGS. Alignments obtained by different prog...

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Detalles Bibliográficos
Autores principales: Cuevas-Córdoba, Betzaida, Fresno, Cristóbal, Haase-Hernández, Joshua I., Barbosa-Amezcua, Martín, Mata-Rocha, Minerva, Muñoz-Torrico, Marcela, Salazar-Lezama, Miguel A., Martínez-Orozco, José A., Narváez-Díaz, Luis A., Salas-Hernández, Jorge, González-Covarrubias, Vanessa, Soberón, Xavier
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2021
Materias:
Research Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8547644/
https://www.ncbi.nlm.nih.gov/pubmed/34699523
http://dx.doi.org/10.1371/journal.pone.0258774

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