The complete chloroplast genome of Agave angustifolia

Agave angustifolia is commonly used for the production of bacanora, a kind of fermented and distilled beverage in Mexico. In the present study, we have successfully assembled its chloroplast genome. The full length of the genome is 157,274 bp with the GC content of 37.84%. There is a large single co...

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Autores principales: Qin, Xu, Yang, Xinli, Huang, Xing, Jin, Gan, Yang, Xiangyan, Wu, Mi, Chen, Tao, Yi, Kexian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8547807/
https://www.ncbi.nlm.nih.gov/pubmed/34712803
http://dx.doi.org/10.1080/23802359.2021.1941360
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author Qin, Xu
Yang, Xinli
Huang, Xing
Jin, Gan
Yang, Xiangyan
Wu, Mi
Chen, Tao
Yi, Kexian
author_facet Qin, Xu
Yang, Xinli
Huang, Xing
Jin, Gan
Yang, Xiangyan
Wu, Mi
Chen, Tao
Yi, Kexian
author_sort Qin, Xu
collection PubMed
description Agave angustifolia is commonly used for the production of bacanora, a kind of fermented and distilled beverage in Mexico. In the present study, we have successfully assembled its chloroplast genome. The full length of the genome is 157,274 bp with the GC content of 37.84%. There is a large single copy region (LSC) of 85,895 bp, a pair of inverted repeat regions (IR) of 26,575 bp and a small single copy region (SSC) of 18,229 bp in the genome. A total of 132 genes are annotated in the cp genome. Among these, there are 86 protein-coding genes, 38 tRNAs and 8 rRNAs. Phylogenetic analysis reveals that A. angustifolia is closely related with A. H11648.
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spelling pubmed-85478072021-10-27 The complete chloroplast genome of Agave angustifolia Qin, Xu Yang, Xinli Huang, Xing Jin, Gan Yang, Xiangyan Wu, Mi Chen, Tao Yi, Kexian Mitochondrial DNA B Resour Mitogenome Announcement Agave angustifolia is commonly used for the production of bacanora, a kind of fermented and distilled beverage in Mexico. In the present study, we have successfully assembled its chloroplast genome. The full length of the genome is 157,274 bp with the GC content of 37.84%. There is a large single copy region (LSC) of 85,895 bp, a pair of inverted repeat regions (IR) of 26,575 bp and a small single copy region (SSC) of 18,229 bp in the genome. A total of 132 genes are annotated in the cp genome. Among these, there are 86 protein-coding genes, 38 tRNAs and 8 rRNAs. Phylogenetic analysis reveals that A. angustifolia is closely related with A. H11648. Taylor & Francis 2021-10-22 /pmc/articles/PMC8547807/ /pubmed/34712803 http://dx.doi.org/10.1080/23802359.2021.1941360 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Qin, Xu
Yang, Xinli
Huang, Xing
Jin, Gan
Yang, Xiangyan
Wu, Mi
Chen, Tao
Yi, Kexian
The complete chloroplast genome of Agave angustifolia
title The complete chloroplast genome of Agave angustifolia
title_full The complete chloroplast genome of Agave angustifolia
title_fullStr The complete chloroplast genome of Agave angustifolia
title_full_unstemmed The complete chloroplast genome of Agave angustifolia
title_short The complete chloroplast genome of Agave angustifolia
title_sort complete chloroplast genome of agave angustifolia
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8547807/
https://www.ncbi.nlm.nih.gov/pubmed/34712803
http://dx.doi.org/10.1080/23802359.2021.1941360
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