Cargando…
The complete chloroplast genome of Pseudognaphalium affine (D.Don) Anderb. (Asteraceae)
Pseudognaphalium affine (D.Don) Anderb. is an annual herbaceous plant used as a vegetable and traditional medicine. Here, we sequenced and assembled the complete chloroplast genome of P. affine. The plastome is 151,573 bp in size with a pair of inverted repeat regions (IRs) of 24,849 bp each, a larg...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8547826/ https://www.ncbi.nlm.nih.gov/pubmed/34712810 http://dx.doi.org/10.1080/23802359.2021.1993104 |
_version_ | 1784590455148642304 |
---|---|
author | Xie, Li Zhao, Jiale Liu, Rong |
author_facet | Xie, Li Zhao, Jiale Liu, Rong |
author_sort | Xie, Li |
collection | PubMed |
description | Pseudognaphalium affine (D.Don) Anderb. is an annual herbaceous plant used as a vegetable and traditional medicine. Here, we sequenced and assembled the complete chloroplast genome of P. affine. The plastome is 151,573 bp in size with a pair of inverted repeat regions (IRs) of 24,849 bp each, a large single-copy region (LSC) of 83,632 bp, and a small single-copy region (SSC) of 18,243 bp. The overall GC content of the whole plastome is 37.33%, and the IR regions are more GC rich (43.08%) than the LSC (35.30%) and SSC (31.03%) regions. It contains 129 genes, including 83 protein-coding genes, 36 tRNAs, eight rRNAs, and two pseudogenes. Phylogenetic analysis showed that P. affine is most closely related to Leontopodium leiolepis. This genome will provide a useful genetic resource for future conservation, evolution, and phylogeny studies of P. affine and the tribe Inuleae. |
format | Online Article Text |
id | pubmed-8547826 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-85478262021-10-27 The complete chloroplast genome of Pseudognaphalium affine (D.Don) Anderb. (Asteraceae) Xie, Li Zhao, Jiale Liu, Rong Mitochondrial DNA B Resour Mitogenome Announcement Pseudognaphalium affine (D.Don) Anderb. is an annual herbaceous plant used as a vegetable and traditional medicine. Here, we sequenced and assembled the complete chloroplast genome of P. affine. The plastome is 151,573 bp in size with a pair of inverted repeat regions (IRs) of 24,849 bp each, a large single-copy region (LSC) of 83,632 bp, and a small single-copy region (SSC) of 18,243 bp. The overall GC content of the whole plastome is 37.33%, and the IR regions are more GC rich (43.08%) than the LSC (35.30%) and SSC (31.03%) regions. It contains 129 genes, including 83 protein-coding genes, 36 tRNAs, eight rRNAs, and two pseudogenes. Phylogenetic analysis showed that P. affine is most closely related to Leontopodium leiolepis. This genome will provide a useful genetic resource for future conservation, evolution, and phylogeny studies of P. affine and the tribe Inuleae. Taylor & Francis 2021-10-23 /pmc/articles/PMC8547826/ /pubmed/34712810 http://dx.doi.org/10.1080/23802359.2021.1993104 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Xie, Li Zhao, Jiale Liu, Rong The complete chloroplast genome of Pseudognaphalium affine (D.Don) Anderb. (Asteraceae) |
title | The complete chloroplast genome of Pseudognaphalium affine (D.Don) Anderb. (Asteraceae) |
title_full | The complete chloroplast genome of Pseudognaphalium affine (D.Don) Anderb. (Asteraceae) |
title_fullStr | The complete chloroplast genome of Pseudognaphalium affine (D.Don) Anderb. (Asteraceae) |
title_full_unstemmed | The complete chloroplast genome of Pseudognaphalium affine (D.Don) Anderb. (Asteraceae) |
title_short | The complete chloroplast genome of Pseudognaphalium affine (D.Don) Anderb. (Asteraceae) |
title_sort | complete chloroplast genome of pseudognaphalium affine (d.don) anderb. (asteraceae) |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8547826/ https://www.ncbi.nlm.nih.gov/pubmed/34712810 http://dx.doi.org/10.1080/23802359.2021.1993104 |
work_keys_str_mv | AT xieli thecompletechloroplastgenomeofpseudognaphaliumaffineddonanderbasteraceae AT zhaojiale thecompletechloroplastgenomeofpseudognaphaliumaffineddonanderbasteraceae AT liurong thecompletechloroplastgenomeofpseudognaphaliumaffineddonanderbasteraceae AT xieli completechloroplastgenomeofpseudognaphaliumaffineddonanderbasteraceae AT zhaojiale completechloroplastgenomeofpseudognaphaliumaffineddonanderbasteraceae AT liurong completechloroplastgenomeofpseudognaphaliumaffineddonanderbasteraceae |