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The complete chloroplast genome of Pseudognaphalium affine (D.Don) Anderb. (Asteraceae)

Pseudognaphalium affine (D.Don) Anderb. is an annual herbaceous plant used as a vegetable and traditional medicine. Here, we sequenced and assembled the complete chloroplast genome of P. affine. The plastome is 151,573 bp in size with a pair of inverted repeat regions (IRs) of 24,849 bp each, a larg...

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Detalles Bibliográficos
Autores principales: Xie, Li, Zhao, Jiale, Liu, Rong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8547826/
https://www.ncbi.nlm.nih.gov/pubmed/34712810
http://dx.doi.org/10.1080/23802359.2021.1993104
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author Xie, Li
Zhao, Jiale
Liu, Rong
author_facet Xie, Li
Zhao, Jiale
Liu, Rong
author_sort Xie, Li
collection PubMed
description Pseudognaphalium affine (D.Don) Anderb. is an annual herbaceous plant used as a vegetable and traditional medicine. Here, we sequenced and assembled the complete chloroplast genome of P. affine. The plastome is 151,573 bp in size with a pair of inverted repeat regions (IRs) of 24,849 bp each, a large single-copy region (LSC) of 83,632 bp, and a small single-copy region (SSC) of 18,243 bp. The overall GC content of the whole plastome is 37.33%, and the IR regions are more GC rich (43.08%) than the LSC (35.30%) and SSC (31.03%) regions. It contains 129 genes, including 83 protein-coding genes, 36 tRNAs, eight rRNAs, and two pseudogenes. Phylogenetic analysis showed that P. affine is most closely related to Leontopodium leiolepis. This genome will provide a useful genetic resource for future conservation, evolution, and phylogeny studies of P. affine and the tribe Inuleae.
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spelling pubmed-85478262021-10-27 The complete chloroplast genome of Pseudognaphalium affine (D.Don) Anderb. (Asteraceae) Xie, Li Zhao, Jiale Liu, Rong Mitochondrial DNA B Resour Mitogenome Announcement Pseudognaphalium affine (D.Don) Anderb. is an annual herbaceous plant used as a vegetable and traditional medicine. Here, we sequenced and assembled the complete chloroplast genome of P. affine. The plastome is 151,573 bp in size with a pair of inverted repeat regions (IRs) of 24,849 bp each, a large single-copy region (LSC) of 83,632 bp, and a small single-copy region (SSC) of 18,243 bp. The overall GC content of the whole plastome is 37.33%, and the IR regions are more GC rich (43.08%) than the LSC (35.30%) and SSC (31.03%) regions. It contains 129 genes, including 83 protein-coding genes, 36 tRNAs, eight rRNAs, and two pseudogenes. Phylogenetic analysis showed that P. affine is most closely related to Leontopodium leiolepis. This genome will provide a useful genetic resource for future conservation, evolution, and phylogeny studies of P. affine and the tribe Inuleae. Taylor & Francis 2021-10-23 /pmc/articles/PMC8547826/ /pubmed/34712810 http://dx.doi.org/10.1080/23802359.2021.1993104 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Xie, Li
Zhao, Jiale
Liu, Rong
The complete chloroplast genome of Pseudognaphalium affine (D.Don) Anderb. (Asteraceae)
title The complete chloroplast genome of Pseudognaphalium affine (D.Don) Anderb. (Asteraceae)
title_full The complete chloroplast genome of Pseudognaphalium affine (D.Don) Anderb. (Asteraceae)
title_fullStr The complete chloroplast genome of Pseudognaphalium affine (D.Don) Anderb. (Asteraceae)
title_full_unstemmed The complete chloroplast genome of Pseudognaphalium affine (D.Don) Anderb. (Asteraceae)
title_short The complete chloroplast genome of Pseudognaphalium affine (D.Don) Anderb. (Asteraceae)
title_sort complete chloroplast genome of pseudognaphalium affine (d.don) anderb. (asteraceae)
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8547826/
https://www.ncbi.nlm.nih.gov/pubmed/34712810
http://dx.doi.org/10.1080/23802359.2021.1993104
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