Cargando…

The complete chloroplast genome of Arisaema bockii Engler and its phylogenetic analysis in the family Araceae

Arisaema bockii Engler is a perennial herbaceous medicinal plant, which is widely distributed in many provinces in China such as Anhui, Jiangsu, and Zhejiang. In this study, the complete chloroplast genome sequence of A. bockii was assembled and characterized based on high-throughput sequencing data...

Descripción completa

Detalles Bibliográficos
Autores principales: Yi, Shanyong, Xu, Tao, Song, Xiangwen, Wang, Wei, Wang, Guanglin, Yu, Wangyang, Han, Bangxing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8547865/
https://www.ncbi.nlm.nih.gov/pubmed/34712813
http://dx.doi.org/10.1080/23802359.2021.1993107
_version_ 1784590462712020992
author Yi, Shanyong
Xu, Tao
Song, Xiangwen
Wang, Wei
Wang, Guanglin
Yu, Wangyang
Han, Bangxing
author_facet Yi, Shanyong
Xu, Tao
Song, Xiangwen
Wang, Wei
Wang, Guanglin
Yu, Wangyang
Han, Bangxing
author_sort Yi, Shanyong
collection PubMed
description Arisaema bockii Engler is a perennial herbaceous medicinal plant, which is widely distributed in many provinces in China such as Anhui, Jiangsu, and Zhejiang. In this study, the complete chloroplast genome sequence of A. bockii was assembled and characterized based on high-throughput sequencing data. The total length of chloroplast genome was 175,537 bp, including large single-copy (LSC) and small single-copy (SSC) regions of 98,870 bp and 23,345 bp, respectively, which were separated by a pair of 27,161 bp inverted repeat (IR) regions. The genome contained 129 genes, including 84 protein-coding genes, 36 tRNA genes, 8 rRNA genes, and one pseudogene. The overall GC content of the genome was 33.6%. A phylogenetic tree reconstructed by 30 chloroplast genomes revealed that A. bockii was mostly related to the same genus species A. ringens, A. franchetianum and A. erubescens. The work reported the first complete chloroplast genome of A. bockii, which may provide some useful information to the evolution of the family Araceae.
format Online
Article
Text
id pubmed-8547865
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Taylor & Francis
record_format MEDLINE/PubMed
spelling pubmed-85478652021-10-27 The complete chloroplast genome of Arisaema bockii Engler and its phylogenetic analysis in the family Araceae Yi, Shanyong Xu, Tao Song, Xiangwen Wang, Wei Wang, Guanglin Yu, Wangyang Han, Bangxing Mitochondrial DNA B Resour Mitogenome Announcement Arisaema bockii Engler is a perennial herbaceous medicinal plant, which is widely distributed in many provinces in China such as Anhui, Jiangsu, and Zhejiang. In this study, the complete chloroplast genome sequence of A. bockii was assembled and characterized based on high-throughput sequencing data. The total length of chloroplast genome was 175,537 bp, including large single-copy (LSC) and small single-copy (SSC) regions of 98,870 bp and 23,345 bp, respectively, which were separated by a pair of 27,161 bp inverted repeat (IR) regions. The genome contained 129 genes, including 84 protein-coding genes, 36 tRNA genes, 8 rRNA genes, and one pseudogene. The overall GC content of the genome was 33.6%. A phylogenetic tree reconstructed by 30 chloroplast genomes revealed that A. bockii was mostly related to the same genus species A. ringens, A. franchetianum and A. erubescens. The work reported the first complete chloroplast genome of A. bockii, which may provide some useful information to the evolution of the family Araceae. Taylor & Francis 2021-10-23 /pmc/articles/PMC8547865/ /pubmed/34712813 http://dx.doi.org/10.1080/23802359.2021.1993107 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Yi, Shanyong
Xu, Tao
Song, Xiangwen
Wang, Wei
Wang, Guanglin
Yu, Wangyang
Han, Bangxing
The complete chloroplast genome of Arisaema bockii Engler and its phylogenetic analysis in the family Araceae
title The complete chloroplast genome of Arisaema bockii Engler and its phylogenetic analysis in the family Araceae
title_full The complete chloroplast genome of Arisaema bockii Engler and its phylogenetic analysis in the family Araceae
title_fullStr The complete chloroplast genome of Arisaema bockii Engler and its phylogenetic analysis in the family Araceae
title_full_unstemmed The complete chloroplast genome of Arisaema bockii Engler and its phylogenetic analysis in the family Araceae
title_short The complete chloroplast genome of Arisaema bockii Engler and its phylogenetic analysis in the family Araceae
title_sort complete chloroplast genome of arisaema bockii engler and its phylogenetic analysis in the family araceae
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8547865/
https://www.ncbi.nlm.nih.gov/pubmed/34712813
http://dx.doi.org/10.1080/23802359.2021.1993107
work_keys_str_mv AT yishanyong thecompletechloroplastgenomeofarisaemabockiiengleranditsphylogeneticanalysisinthefamilyaraceae
AT xutao thecompletechloroplastgenomeofarisaemabockiiengleranditsphylogeneticanalysisinthefamilyaraceae
AT songxiangwen thecompletechloroplastgenomeofarisaemabockiiengleranditsphylogeneticanalysisinthefamilyaraceae
AT wangwei thecompletechloroplastgenomeofarisaemabockiiengleranditsphylogeneticanalysisinthefamilyaraceae
AT wangguanglin thecompletechloroplastgenomeofarisaemabockiiengleranditsphylogeneticanalysisinthefamilyaraceae
AT yuwangyang thecompletechloroplastgenomeofarisaemabockiiengleranditsphylogeneticanalysisinthefamilyaraceae
AT hanbangxing thecompletechloroplastgenomeofarisaemabockiiengleranditsphylogeneticanalysisinthefamilyaraceae
AT yishanyong completechloroplastgenomeofarisaemabockiiengleranditsphylogeneticanalysisinthefamilyaraceae
AT xutao completechloroplastgenomeofarisaemabockiiengleranditsphylogeneticanalysisinthefamilyaraceae
AT songxiangwen completechloroplastgenomeofarisaemabockiiengleranditsphylogeneticanalysisinthefamilyaraceae
AT wangwei completechloroplastgenomeofarisaemabockiiengleranditsphylogeneticanalysisinthefamilyaraceae
AT wangguanglin completechloroplastgenomeofarisaemabockiiengleranditsphylogeneticanalysisinthefamilyaraceae
AT yuwangyang completechloroplastgenomeofarisaemabockiiengleranditsphylogeneticanalysisinthefamilyaraceae
AT hanbangxing completechloroplastgenomeofarisaemabockiiengleranditsphylogeneticanalysisinthefamilyaraceae