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Sequencing and phylogenetic analysis of the complete chloroplast genome of Arisaema heterophyllum Blume
Arisaema heterophyllum Blume is a perennial medicinal herb widely distributed in China, Korea and Japan. In this study, the complete chloroplast genome sequence of A. heterophyllum was assembled and characterized based on high-throughput sequencing data. The whole chloroplast genome is 170,610 bp in...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8547874/ https://www.ncbi.nlm.nih.gov/pubmed/34712816 http://dx.doi.org/10.1080/23802359.2021.1993460 |
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author | Yi, Shanyong Xu, Tao Song, Xiangwen Wang, Wei Yu, Wangyang Han, Bangxing |
author_facet | Yi, Shanyong Xu, Tao Song, Xiangwen Wang, Wei Yu, Wangyang Han, Bangxing |
author_sort | Yi, Shanyong |
collection | PubMed |
description | Arisaema heterophyllum Blume is a perennial medicinal herb widely distributed in China, Korea and Japan. In this study, the complete chloroplast genome sequence of A. heterophyllum was assembled and characterized based on high-throughput sequencing data. The whole chloroplast genome is 170,610 bp in length and contains 95,485 bp large single-copy (LSC) and 22,605 bp small single-copy (SSC) regions separated by a pair of 26,260 bp inverted repeat (IR) regions. It contained a total of 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 rRNA genes, with an overall GC content of 34.5%. A phylogenetic tree reconstructed by 30 chloroplast genomes reveals that A. heterophyllum is mostly related to the same genus A. ringens, A. franchetianum and A. erubescens. The complete chloroplast genome of A. heterophyllum was the firstly reported and deposited at GenBank under accession number MZ424448. |
format | Online Article Text |
id | pubmed-8547874 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-85478742021-10-27 Sequencing and phylogenetic analysis of the complete chloroplast genome of Arisaema heterophyllum Blume Yi, Shanyong Xu, Tao Song, Xiangwen Wang, Wei Yu, Wangyang Han, Bangxing Mitochondrial DNA B Resour Mitogenome Announcement Arisaema heterophyllum Blume is a perennial medicinal herb widely distributed in China, Korea and Japan. In this study, the complete chloroplast genome sequence of A. heterophyllum was assembled and characterized based on high-throughput sequencing data. The whole chloroplast genome is 170,610 bp in length and contains 95,485 bp large single-copy (LSC) and 22,605 bp small single-copy (SSC) regions separated by a pair of 26,260 bp inverted repeat (IR) regions. It contained a total of 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 rRNA genes, with an overall GC content of 34.5%. A phylogenetic tree reconstructed by 30 chloroplast genomes reveals that A. heterophyllum is mostly related to the same genus A. ringens, A. franchetianum and A. erubescens. The complete chloroplast genome of A. heterophyllum was the firstly reported and deposited at GenBank under accession number MZ424448. Taylor & Francis 2021-10-23 /pmc/articles/PMC8547874/ /pubmed/34712816 http://dx.doi.org/10.1080/23802359.2021.1993460 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Mitogenome Announcement Yi, Shanyong Xu, Tao Song, Xiangwen Wang, Wei Yu, Wangyang Han, Bangxing Sequencing and phylogenetic analysis of the complete chloroplast genome of Arisaema heterophyllum Blume |
title | Sequencing and phylogenetic analysis of the complete chloroplast genome of Arisaema heterophyllum Blume |
title_full | Sequencing and phylogenetic analysis of the complete chloroplast genome of Arisaema heterophyllum Blume |
title_fullStr | Sequencing and phylogenetic analysis of the complete chloroplast genome of Arisaema heterophyllum Blume |
title_full_unstemmed | Sequencing and phylogenetic analysis of the complete chloroplast genome of Arisaema heterophyllum Blume |
title_short | Sequencing and phylogenetic analysis of the complete chloroplast genome of Arisaema heterophyllum Blume |
title_sort | sequencing and phylogenetic analysis of the complete chloroplast genome of arisaema heterophyllum blume |
topic | Mitogenome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8547874/ https://www.ncbi.nlm.nih.gov/pubmed/34712816 http://dx.doi.org/10.1080/23802359.2021.1993460 |
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