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Sequencing and phylogenetic analysis of the complete chloroplast genome of Arisaema heterophyllum Blume

Arisaema heterophyllum Blume is a perennial medicinal herb widely distributed in China, Korea and Japan. In this study, the complete chloroplast genome sequence of A. heterophyllum was assembled and characterized based on high-throughput sequencing data. The whole chloroplast genome is 170,610 bp in...

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Autores principales: Yi, Shanyong, Xu, Tao, Song, Xiangwen, Wang, Wei, Yu, Wangyang, Han, Bangxing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8547874/
https://www.ncbi.nlm.nih.gov/pubmed/34712816
http://dx.doi.org/10.1080/23802359.2021.1993460
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author Yi, Shanyong
Xu, Tao
Song, Xiangwen
Wang, Wei
Yu, Wangyang
Han, Bangxing
author_facet Yi, Shanyong
Xu, Tao
Song, Xiangwen
Wang, Wei
Yu, Wangyang
Han, Bangxing
author_sort Yi, Shanyong
collection PubMed
description Arisaema heterophyllum Blume is a perennial medicinal herb widely distributed in China, Korea and Japan. In this study, the complete chloroplast genome sequence of A. heterophyllum was assembled and characterized based on high-throughput sequencing data. The whole chloroplast genome is 170,610 bp in length and contains 95,485 bp large single-copy (LSC) and 22,605 bp small single-copy (SSC) regions separated by a pair of 26,260 bp inverted repeat (IR) regions. It contained a total of 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 rRNA genes, with an overall GC content of 34.5%. A phylogenetic tree reconstructed by 30 chloroplast genomes reveals that A. heterophyllum is mostly related to the same genus A. ringens, A. franchetianum and A. erubescens. The complete chloroplast genome of A. heterophyllum was the firstly reported and deposited at GenBank under accession number MZ424448.
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spelling pubmed-85478742021-10-27 Sequencing and phylogenetic analysis of the complete chloroplast genome of Arisaema heterophyllum Blume Yi, Shanyong Xu, Tao Song, Xiangwen Wang, Wei Yu, Wangyang Han, Bangxing Mitochondrial DNA B Resour Mitogenome Announcement Arisaema heterophyllum Blume is a perennial medicinal herb widely distributed in China, Korea and Japan. In this study, the complete chloroplast genome sequence of A. heterophyllum was assembled and characterized based on high-throughput sequencing data. The whole chloroplast genome is 170,610 bp in length and contains 95,485 bp large single-copy (LSC) and 22,605 bp small single-copy (SSC) regions separated by a pair of 26,260 bp inverted repeat (IR) regions. It contained a total of 129 genes, including 84 protein-coding genes, 37 tRNA genes, and 8 rRNA genes, with an overall GC content of 34.5%. A phylogenetic tree reconstructed by 30 chloroplast genomes reveals that A. heterophyllum is mostly related to the same genus A. ringens, A. franchetianum and A. erubescens. The complete chloroplast genome of A. heterophyllum was the firstly reported and deposited at GenBank under accession number MZ424448. Taylor & Francis 2021-10-23 /pmc/articles/PMC8547874/ /pubmed/34712816 http://dx.doi.org/10.1080/23802359.2021.1993460 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Yi, Shanyong
Xu, Tao
Song, Xiangwen
Wang, Wei
Yu, Wangyang
Han, Bangxing
Sequencing and phylogenetic analysis of the complete chloroplast genome of Arisaema heterophyllum Blume
title Sequencing and phylogenetic analysis of the complete chloroplast genome of Arisaema heterophyllum Blume
title_full Sequencing and phylogenetic analysis of the complete chloroplast genome of Arisaema heterophyllum Blume
title_fullStr Sequencing and phylogenetic analysis of the complete chloroplast genome of Arisaema heterophyllum Blume
title_full_unstemmed Sequencing and phylogenetic analysis of the complete chloroplast genome of Arisaema heterophyllum Blume
title_short Sequencing and phylogenetic analysis of the complete chloroplast genome of Arisaema heterophyllum Blume
title_sort sequencing and phylogenetic analysis of the complete chloroplast genome of arisaema heterophyllum blume
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8547874/
https://www.ncbi.nlm.nih.gov/pubmed/34712816
http://dx.doi.org/10.1080/23802359.2021.1993460
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