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Peripheral Blood-Based Gene Expression Studies in Schizophrenia: A Systematic Review

Schizophrenia is a disorder that is characterized by delusions, hallucinations, disorganized speech or behavior, and socio-occupational impairment. The duration of observation and variability in symptoms can make the accurate diagnosis difficult. Identification of biomarkers for schizophrenia (SCZ)...

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Autores principales: Wagh, Vipul Vilas, Vyas, Parin, Agrawal, Suchita, Pachpor, Tejaswini A., Paralikar, Vasudeo, Khare, Satyajeet P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8548640/
https://www.ncbi.nlm.nih.gov/pubmed/34721526
http://dx.doi.org/10.3389/fgene.2021.736483
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author Wagh, Vipul Vilas
Vyas, Parin
Agrawal, Suchita
Pachpor, Tejaswini A.
Paralikar, Vasudeo
Khare, Satyajeet P.
author_facet Wagh, Vipul Vilas
Vyas, Parin
Agrawal, Suchita
Pachpor, Tejaswini A.
Paralikar, Vasudeo
Khare, Satyajeet P.
author_sort Wagh, Vipul Vilas
collection PubMed
description Schizophrenia is a disorder that is characterized by delusions, hallucinations, disorganized speech or behavior, and socio-occupational impairment. The duration of observation and variability in symptoms can make the accurate diagnosis difficult. Identification of biomarkers for schizophrenia (SCZ) can help in early diagnosis, ascertaining the diagnosis, and development of effective treatment strategies. Here we review peripheral blood-based gene expression studies for identification of gene expression biomarkers for SCZ. A literature search was carried out in PubMed and Web of Science databases for blood-based gene expression studies in SCZ. A list of differentially expressed genes (DEGs) was compiled and analyzed for overlap with genetic markers, differences based on drug status of the participants, functional enrichment, and for effect of antipsychotics. This literature survey identified 61 gene expression studies. Seventeen out of these studies were based on expression microarrays. A comparative analysis of the DEGs (n = 227) from microarray studies revealed differences between drug-naive and drug-treated SCZ participants. We found that of the 227 DEGs, 11 genes (ACOT7, AGO2, DISC1, LDB1, RUNX3, SIGIRR, SLC18A1, NRG1, CHRNB2, PRKAB2, and ZNF74) also showed genetic and epigenetic changes associated with SCZ. Functional enrichment analysis of the DEGs revealed dysregulation of proline and 4-hydroxyproline metabolism. Also, arginine and proline metabolism was the most functionally enriched pathway for SCZ in our analysis. Follow-up studies identified effect of antipsychotic treatment on peripheral blood gene expression. Of the 27 genes compiled from the follow-up studies AKT1, DISC1, HP, and EIF2D had no effect on their expression status as a result of antipsychotic treatment. Despite the differences in the nature of the study, ethnicity of the population, and the gene expression analysis method used, we identified several coherent observations. An overlap, though limited, of genetic, epigenetic and gene expression changes supports interplay of genetic and environmental factors in SCZ. The studies validate the use of blood as a surrogate tissue for biomarker analysis. We conclude that well-designed cohort studies across diverse populations, use of high-throughput sequencing technology, and use of artificial intelligence (AI) based computational analysis will significantly improve our understanding and diagnostic capabilities for this complex disorder.
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spelling pubmed-85486402021-10-28 Peripheral Blood-Based Gene Expression Studies in Schizophrenia: A Systematic Review Wagh, Vipul Vilas Vyas, Parin Agrawal, Suchita Pachpor, Tejaswini A. Paralikar, Vasudeo Khare, Satyajeet P. Front Genet Genetics Schizophrenia is a disorder that is characterized by delusions, hallucinations, disorganized speech or behavior, and socio-occupational impairment. The duration of observation and variability in symptoms can make the accurate diagnosis difficult. Identification of biomarkers for schizophrenia (SCZ) can help in early diagnosis, ascertaining the diagnosis, and development of effective treatment strategies. Here we review peripheral blood-based gene expression studies for identification of gene expression biomarkers for SCZ. A literature search was carried out in PubMed and Web of Science databases for blood-based gene expression studies in SCZ. A list of differentially expressed genes (DEGs) was compiled and analyzed for overlap with genetic markers, differences based on drug status of the participants, functional enrichment, and for effect of antipsychotics. This literature survey identified 61 gene expression studies. Seventeen out of these studies were based on expression microarrays. A comparative analysis of the DEGs (n = 227) from microarray studies revealed differences between drug-naive and drug-treated SCZ participants. We found that of the 227 DEGs, 11 genes (ACOT7, AGO2, DISC1, LDB1, RUNX3, SIGIRR, SLC18A1, NRG1, CHRNB2, PRKAB2, and ZNF74) also showed genetic and epigenetic changes associated with SCZ. Functional enrichment analysis of the DEGs revealed dysregulation of proline and 4-hydroxyproline metabolism. Also, arginine and proline metabolism was the most functionally enriched pathway for SCZ in our analysis. Follow-up studies identified effect of antipsychotic treatment on peripheral blood gene expression. Of the 27 genes compiled from the follow-up studies AKT1, DISC1, HP, and EIF2D had no effect on their expression status as a result of antipsychotic treatment. Despite the differences in the nature of the study, ethnicity of the population, and the gene expression analysis method used, we identified several coherent observations. An overlap, though limited, of genetic, epigenetic and gene expression changes supports interplay of genetic and environmental factors in SCZ. The studies validate the use of blood as a surrogate tissue for biomarker analysis. We conclude that well-designed cohort studies across diverse populations, use of high-throughput sequencing technology, and use of artificial intelligence (AI) based computational analysis will significantly improve our understanding and diagnostic capabilities for this complex disorder. Frontiers Media S.A. 2021-10-13 /pmc/articles/PMC8548640/ /pubmed/34721526 http://dx.doi.org/10.3389/fgene.2021.736483 Text en Copyright © 2021 Wagh, Vyas, Agrawal, Pachpor, Paralikar and Khare. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Wagh, Vipul Vilas
Vyas, Parin
Agrawal, Suchita
Pachpor, Tejaswini A.
Paralikar, Vasudeo
Khare, Satyajeet P.
Peripheral Blood-Based Gene Expression Studies in Schizophrenia: A Systematic Review
title Peripheral Blood-Based Gene Expression Studies in Schizophrenia: A Systematic Review
title_full Peripheral Blood-Based Gene Expression Studies in Schizophrenia: A Systematic Review
title_fullStr Peripheral Blood-Based Gene Expression Studies in Schizophrenia: A Systematic Review
title_full_unstemmed Peripheral Blood-Based Gene Expression Studies in Schizophrenia: A Systematic Review
title_short Peripheral Blood-Based Gene Expression Studies in Schizophrenia: A Systematic Review
title_sort peripheral blood-based gene expression studies in schizophrenia: a systematic review
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8548640/
https://www.ncbi.nlm.nih.gov/pubmed/34721526
http://dx.doi.org/10.3389/fgene.2021.736483
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