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Creating High-Resolution Microscopic Cross-Section Images of Hardwood Species Using Generative Adversarial Networks

Microscopic wood identification plays a critical role in many economically important areas in wood science. Historically, producing and curating relevant and representative microscopic cross-section images of wood species is limited to highly experienced and trained anatomists. This manuscript demon...

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Autores principales: Lopes, Dercilio Junior Verly, Monti, Gustavo Fardin, Burgreen, Greg W., Moulin, Jordão Cabral, dos Santos Bobadilha, Gabrielly, Entsminger, Edward D., Oliveira, Ramon Ferreira
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8548738/
https://www.ncbi.nlm.nih.gov/pubmed/34721488
http://dx.doi.org/10.3389/fpls.2021.760139
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author Lopes, Dercilio Junior Verly
Monti, Gustavo Fardin
Burgreen, Greg W.
Moulin, Jordão Cabral
dos Santos Bobadilha, Gabrielly
Entsminger, Edward D.
Oliveira, Ramon Ferreira
author_facet Lopes, Dercilio Junior Verly
Monti, Gustavo Fardin
Burgreen, Greg W.
Moulin, Jordão Cabral
dos Santos Bobadilha, Gabrielly
Entsminger, Edward D.
Oliveira, Ramon Ferreira
author_sort Lopes, Dercilio Junior Verly
collection PubMed
description Microscopic wood identification plays a critical role in many economically important areas in wood science. Historically, producing and curating relevant and representative microscopic cross-section images of wood species is limited to highly experienced and trained anatomists. This manuscript demonstrates the feasibility of generating synthetic microscopic cross-sections of hardwood species. We leveraged a publicly available dataset of 119 hardwood species to train a style-based generative adversarial network (GAN). The proposed GAN generated anatomically accurate cross-section images with remarkable fidelity to actual data. Quantitative metrics corroborated the capacity of the generative model in capturing complex wood structure by resulting in a Fréchet inception distance score of 17.38. Image diversity was calculated using the Structural Similarity Index Measure (SSIM). The SSIM results confirmed that the GAN approach can successfully synthesize diverse images. To confirm the usefulness and realism of the GAN generated images, eight professional wood anatomists in two experience levels participated in a visual Turing test and correctly identified fake and actual images at rates of 48.3 and 43.7%, respectively, with no statistical difference when compared to random guess. The generative model can synthesize realistic, diverse, and meaningful high-resolution microscope cross-section images that are virtually indistinguishable from real images. Furthermore, the framework presented may be suitable for improving current deep learning models, helping understand potential breeding between species, and may be used as an educational tool.
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spelling pubmed-85487382021-10-28 Creating High-Resolution Microscopic Cross-Section Images of Hardwood Species Using Generative Adversarial Networks Lopes, Dercilio Junior Verly Monti, Gustavo Fardin Burgreen, Greg W. Moulin, Jordão Cabral dos Santos Bobadilha, Gabrielly Entsminger, Edward D. Oliveira, Ramon Ferreira Front Plant Sci Plant Science Microscopic wood identification plays a critical role in many economically important areas in wood science. Historically, producing and curating relevant and representative microscopic cross-section images of wood species is limited to highly experienced and trained anatomists. This manuscript demonstrates the feasibility of generating synthetic microscopic cross-sections of hardwood species. We leveraged a publicly available dataset of 119 hardwood species to train a style-based generative adversarial network (GAN). The proposed GAN generated anatomically accurate cross-section images with remarkable fidelity to actual data. Quantitative metrics corroborated the capacity of the generative model in capturing complex wood structure by resulting in a Fréchet inception distance score of 17.38. Image diversity was calculated using the Structural Similarity Index Measure (SSIM). The SSIM results confirmed that the GAN approach can successfully synthesize diverse images. To confirm the usefulness and realism of the GAN generated images, eight professional wood anatomists in two experience levels participated in a visual Turing test and correctly identified fake and actual images at rates of 48.3 and 43.7%, respectively, with no statistical difference when compared to random guess. The generative model can synthesize realistic, diverse, and meaningful high-resolution microscope cross-section images that are virtually indistinguishable from real images. Furthermore, the framework presented may be suitable for improving current deep learning models, helping understand potential breeding between species, and may be used as an educational tool. Frontiers Media S.A. 2021-10-13 /pmc/articles/PMC8548738/ /pubmed/34721488 http://dx.doi.org/10.3389/fpls.2021.760139 Text en Copyright © 2021 Lopes, Monti, Burgreen, Moulin, dos Santos Bobadilha, Entsminger and Oliveira. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Lopes, Dercilio Junior Verly
Monti, Gustavo Fardin
Burgreen, Greg W.
Moulin, Jordão Cabral
dos Santos Bobadilha, Gabrielly
Entsminger, Edward D.
Oliveira, Ramon Ferreira
Creating High-Resolution Microscopic Cross-Section Images of Hardwood Species Using Generative Adversarial Networks
title Creating High-Resolution Microscopic Cross-Section Images of Hardwood Species Using Generative Adversarial Networks
title_full Creating High-Resolution Microscopic Cross-Section Images of Hardwood Species Using Generative Adversarial Networks
title_fullStr Creating High-Resolution Microscopic Cross-Section Images of Hardwood Species Using Generative Adversarial Networks
title_full_unstemmed Creating High-Resolution Microscopic Cross-Section Images of Hardwood Species Using Generative Adversarial Networks
title_short Creating High-Resolution Microscopic Cross-Section Images of Hardwood Species Using Generative Adversarial Networks
title_sort creating high-resolution microscopic cross-section images of hardwood species using generative adversarial networks
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8548738/
https://www.ncbi.nlm.nih.gov/pubmed/34721488
http://dx.doi.org/10.3389/fpls.2021.760139
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