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Optimized-Unet: Novel Algorithm for Parapapillary Atrophy Segmentation
In recent years, an increasing number of people have myopia in China, especially the younger generation. Common myopia may develop into high myopia. High myopia causes visual impairment and blindness. Parapapillary atrophy (PPA) is a typical retinal pathology related to high myopia, which is also a...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8550077/ https://www.ncbi.nlm.nih.gov/pubmed/34720868 http://dx.doi.org/10.3389/fnins.2021.758887 |
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author | Wan, Cheng Wu, Jiasheng Li, Han Yan, Zhipeng Wang, Chenghu Jiang, Qin Cao, Guofan Xu, Yanwu Yang, Weihua |
author_facet | Wan, Cheng Wu, Jiasheng Li, Han Yan, Zhipeng Wang, Chenghu Jiang, Qin Cao, Guofan Xu, Yanwu Yang, Weihua |
author_sort | Wan, Cheng |
collection | PubMed |
description | In recent years, an increasing number of people have myopia in China, especially the younger generation. Common myopia may develop into high myopia. High myopia causes visual impairment and blindness. Parapapillary atrophy (PPA) is a typical retinal pathology related to high myopia, which is also a basic clue for diagnosing high myopia. Therefore, accurate segmentation of the PPA is essential for high myopia diagnosis and treatment. In this study, we propose an optimized Unet (OT-Unet) to solve this important task. OT-Unet uses one of the pre-trained models: Visual Geometry Group (VGG), ResNet, and Res2Net, as a backbone and is combined with edge attention, parallel partial decoder, and reverse attention modules to improve the segmentation accuracy. In general, using the pre-trained models can improve the accuracy with fewer samples. The edge attention module extracts contour information, the parallel partial decoder module combines the multi-scale features, and the reverse attention module integrates high- and low-level features. We also propose an augmented loss function to increase the weight of complex pixels to enable the network to segment more complex lesion areas. Based on a dataset containing 360 images (Including 26 pictures provided by PALM), the proposed OT-Unet achieves a high AUC (Area Under Curve) of 0.9235, indicating a significant improvement over the original Unet (0.7917). |
format | Online Article Text |
id | pubmed-8550077 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-85500772021-10-28 Optimized-Unet: Novel Algorithm for Parapapillary Atrophy Segmentation Wan, Cheng Wu, Jiasheng Li, Han Yan, Zhipeng Wang, Chenghu Jiang, Qin Cao, Guofan Xu, Yanwu Yang, Weihua Front Neurosci Neuroscience In recent years, an increasing number of people have myopia in China, especially the younger generation. Common myopia may develop into high myopia. High myopia causes visual impairment and blindness. Parapapillary atrophy (PPA) is a typical retinal pathology related to high myopia, which is also a basic clue for diagnosing high myopia. Therefore, accurate segmentation of the PPA is essential for high myopia diagnosis and treatment. In this study, we propose an optimized Unet (OT-Unet) to solve this important task. OT-Unet uses one of the pre-trained models: Visual Geometry Group (VGG), ResNet, and Res2Net, as a backbone and is combined with edge attention, parallel partial decoder, and reverse attention modules to improve the segmentation accuracy. In general, using the pre-trained models can improve the accuracy with fewer samples. The edge attention module extracts contour information, the parallel partial decoder module combines the multi-scale features, and the reverse attention module integrates high- and low-level features. We also propose an augmented loss function to increase the weight of complex pixels to enable the network to segment more complex lesion areas. Based on a dataset containing 360 images (Including 26 pictures provided by PALM), the proposed OT-Unet achieves a high AUC (Area Under Curve) of 0.9235, indicating a significant improvement over the original Unet (0.7917). Frontiers Media S.A. 2021-10-13 /pmc/articles/PMC8550077/ /pubmed/34720868 http://dx.doi.org/10.3389/fnins.2021.758887 Text en Copyright © 2021 Wan, Wu, Li, Yan, Wang, Jiang, Cao, Xu and Yang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Wan, Cheng Wu, Jiasheng Li, Han Yan, Zhipeng Wang, Chenghu Jiang, Qin Cao, Guofan Xu, Yanwu Yang, Weihua Optimized-Unet: Novel Algorithm for Parapapillary Atrophy Segmentation |
title | Optimized-Unet: Novel Algorithm for Parapapillary Atrophy Segmentation |
title_full | Optimized-Unet: Novel Algorithm for Parapapillary Atrophy Segmentation |
title_fullStr | Optimized-Unet: Novel Algorithm for Parapapillary Atrophy Segmentation |
title_full_unstemmed | Optimized-Unet: Novel Algorithm for Parapapillary Atrophy Segmentation |
title_short | Optimized-Unet: Novel Algorithm for Parapapillary Atrophy Segmentation |
title_sort | optimized-unet: novel algorithm for parapapillary atrophy segmentation |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8550077/ https://www.ncbi.nlm.nih.gov/pubmed/34720868 http://dx.doi.org/10.3389/fnins.2021.758887 |
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