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DNA Mutations via Chern–Simons Currents

We test the validity of a possible schematization of DNA structure and dynamics based on the Chern–Simons theory, that is a topological field theory mostly considered in the context of effective gravity theories. By means of the expectation value of the Wilson Loop, derived from this analogue gravit...

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Autores principales: Bajardi, Francesco, Altucci, Lucia, Benedetti, Rosaria, Capozziello, Salvatore, Sorbo, Maria Rosaria Del, Franci, Gianluigi, Altucci, Carlo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8551353/
https://www.ncbi.nlm.nih.gov/pubmed/34725629
http://dx.doi.org/10.1140/epjp/s13360-021-01960-5
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author Bajardi, Francesco
Altucci, Lucia
Benedetti, Rosaria
Capozziello, Salvatore
Sorbo, Maria Rosaria Del
Franci, Gianluigi
Altucci, Carlo
author_facet Bajardi, Francesco
Altucci, Lucia
Benedetti, Rosaria
Capozziello, Salvatore
Sorbo, Maria Rosaria Del
Franci, Gianluigi
Altucci, Carlo
author_sort Bajardi, Francesco
collection PubMed
description We test the validity of a possible schematization of DNA structure and dynamics based on the Chern–Simons theory, that is a topological field theory mostly considered in the context of effective gravity theories. By means of the expectation value of the Wilson Loop, derived from this analogue gravity approach, we find the point-like curvature of genomic strings in KRAS human gene and COVID-19 sequences, correlating this curvature with the genetic mutations. The point-like curvature profile, obtained by means of the Chern–Simons currents, can be used to infer the position of the given mutations within the genetic string. Generally, mutations take place in the highest Chern–Simons current gradient locations and subsequent mutated sequences appear to have a smoother curvature than the initial ones, in agreement with a free energy minimization argument.
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spelling pubmed-85513532021-10-28 DNA Mutations via Chern–Simons Currents Bajardi, Francesco Altucci, Lucia Benedetti, Rosaria Capozziello, Salvatore Sorbo, Maria Rosaria Del Franci, Gianluigi Altucci, Carlo Eur Phys J Plus Regular Article We test the validity of a possible schematization of DNA structure and dynamics based on the Chern–Simons theory, that is a topological field theory mostly considered in the context of effective gravity theories. By means of the expectation value of the Wilson Loop, derived from this analogue gravity approach, we find the point-like curvature of genomic strings in KRAS human gene and COVID-19 sequences, correlating this curvature with the genetic mutations. The point-like curvature profile, obtained by means of the Chern–Simons currents, can be used to infer the position of the given mutations within the genetic string. Generally, mutations take place in the highest Chern–Simons current gradient locations and subsequent mutated sequences appear to have a smoother curvature than the initial ones, in agreement with a free energy minimization argument. Springer Berlin Heidelberg 2021-10-28 2021 /pmc/articles/PMC8551353/ /pubmed/34725629 http://dx.doi.org/10.1140/epjp/s13360-021-01960-5 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Regular Article
Bajardi, Francesco
Altucci, Lucia
Benedetti, Rosaria
Capozziello, Salvatore
Sorbo, Maria Rosaria Del
Franci, Gianluigi
Altucci, Carlo
DNA Mutations via Chern–Simons Currents
title DNA Mutations via Chern–Simons Currents
title_full DNA Mutations via Chern–Simons Currents
title_fullStr DNA Mutations via Chern–Simons Currents
title_full_unstemmed DNA Mutations via Chern–Simons Currents
title_short DNA Mutations via Chern–Simons Currents
title_sort dna mutations via chern–simons currents
topic Regular Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8551353/
https://www.ncbi.nlm.nih.gov/pubmed/34725629
http://dx.doi.org/10.1140/epjp/s13360-021-01960-5
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