Cargando…

Mutations in emerging variant of concern lineages disrupt genomic sequencing of SARS-CoV-2 clinical specimens

Mutations in emerging severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) lineages can interfere with laboratory methods used to generate viral genome sequences for public health surveillance. We identified 20 mutations that are widespread in variant of concern lineages and affect widely us...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kuchinski, Kevin S., Nguyen, Jason, Lee, Tracy D., Hickman, Rebecca, Jassem, Agatha N., Hoang, Linda M.N., Prystajecky, Natalie A., Tyson, John R.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	The Authors. Published by Elsevier Ltd on behalf of International Society for Infectious Diseases. 2022
Materias:	Short Communication
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8555373/ https://www.ncbi.nlm.nih.gov/pubmed/34757201 http://dx.doi.org/10.1016/j.ijid.2021.10.050

Ejemplares similares

Assessing oligonucleotide designs from early lab developed PCR diagnostic tests for SARS-CoV-2 using the PCR_strainer pipeline
por: Kuchinski, Kevin S., et al.
Publicado: (2020)

Evaluation of the clinical and analytical performance of the Seegene allplex™ SARS-CoV-2 variants I assay for the detection of variants of concern (VOC) and variants of interests (VOI)
por: Caza, Mélissa, et al.
Publicado: (2021)

Rapid Increase in SARS-CoV-2 P.1 Lineage Leading to Codominance with B.1.1.7 Lineage, British Columbia, Canada, January–April 2021
por: Hogan, Catherine A., et al.
Publicado: (2021)

FilmArray respiratory panel assay: An effective method for detecting viral and atypical bacterial pathogens in bronchoscopy specimens
por: Locher, Kerstin, et al.
Publicado: (2019)

Comparative Single-Dose mRNA and ChAdOx1 Vaccine Effectiveness Against Severe Acute Respiratory Syndrome Coronavirus 2, Including Variants of Concern: Test-Negative Design, British Columbia, Canada
por: Skowronski, Danuta M, et al.
Publicado: (2022)

Single-dose mRNA Vaccine Effectiveness Against Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), Including Alpha and Gamma Variants: A Test-negative Design in Adults 70 Years and Older in British Columbia, Canada
por: Skowronski, Danuta M, et al.
Publicado: (2021)

Assessing Multiplex Tiling PCR Sequencing Approaches for Detecting Genomic Variants of SARS-CoV-2 in Municipal Wastewater
por: Lin, Xuan, et al.
Publicado: (2021)

Spike Mutation Profiles Associated With SARS-CoV-2 Breakthrough Infections in Delta Emerging and Predominant Time Periods in British Columbia, Canada
por: Fibke, Chad D., et al.
Publicado: (2022)

The contrasting role of nasopharyngeal angiotensin converting enzyme 2 (ACE2) transcription in SARS-CoV-2 infection: A cross-sectional study of people tested for COVID-19 in British Columbia, Canada
por: Nikiforuk, Aidan M., et al.
Publicado: (2021)

Influenza Classification Suite: An automated Galaxy workflow for rapid influenza sequence analysis
por: Eisler, Diane, et al.
Publicado: (2020)

Investigation of aminoglycoside resistance inducing conditions and a putative AmrAB-OprM efflux system in Burkholderia vietnamiensis
por: Jassem, Agatha N, et al.
Publicado: (2014)

ProbeTools: designing hybridization probes for targeted genomic sequencing of diverse and hypervariable viral taxa
por: Kuchinski, Kevin S., et al.
Publicado: (2022)

Emergence of SARS-CoV-2 Delta Variant and Effect of Nonpharmaceutical Interventions, British Columbia, Canada
por: Chan, Y.L. Elaine, et al.
Publicado: (2023)

Characterization of Clostridium difficile Strains in British Columbia, Canada: A Shift from NAP1 Majority (2008) to Novel Strain Types (2013) in One Region
por: Jassem, Agatha N., et al.
Publicado: (2016)

COVID-19 in an immunocompromised host: persistent shedding of viable SARS-CoV-2 and emergence of multiple mutations: a case report
por: Leung, Wayne F., et al.
Publicado: (2022)

Emergence of B.1.1.318 SARS-CoV-2 viral lineage and high incidence of alpha B.1.1.7 variant of concern in the Republic of Gabon
por: Manouana, Gédéon Prince, et al.
Publicado: (2022)

Cov2clusters: genomic clustering of SARS-CoV-2 sequences
por: Sobkowiak, Benjamin, et al.
Publicado: (2022)

Optimization of magnetic bead-based nucleic acid extraction for SARS-CoV-2 testing using readily available reagents
por: Haile, Simon, et al.
Publicado: (2022)

Extraction and Detection of Avian Influenza Virus From Wetland Sediment Using Enrichment-Based Targeted Resequencing
por: Tindale, Lauren C., et al.
Publicado: (2020)

Rapid global spread of variants of concern of SARS-CoV-2
por: He, Daihai, et al.
Publicado: (2022)

SARS-CoV-2 variants and pregnant Women: A cause for Concern?
por: Onyinyechi Chionuma, Joy, et al.
Publicado: (2022)

Presence of Interferon Regulatory Factor-1 in Aggressive and Nonaggressive Histological Variants of Basal Cell Carcinoma Specimens
por: Turhan-Haktanir, Nurten, et al.
Publicado: (2010)

BioFire FilmArray Decreases Infection Control Isolation Times by 4 days in ICU, BMT and Respiratory Wards
por: Wong, Titus, et al.
Publicado: (2017)

A novel multiplex electrochemiluminescent immunoassay for detection and quantification of anti-SARS-CoV-2 IgG and anti-seasonal endemic human coronavirus IgG
por: Li, Fang Fang, et al.
Publicado: (2022)

The challenge of screening SARS-CoV-2 variants of concern with RT-qPCR: One variant can hide another
por: Blairon, Laurent, et al.
Publicado: (2021)

Vaccine Effectiveness Against Lineage-matched and -mismatched Influenza B Viruses Across 8 Seasons in Canada, 2010–2011 to 2017–2018
por: Skowronski, Danuta M, et al.
Publicado: (2019)

Specimen Council Resolution concerning The Establishment of the SPC
Publicado: (1967)

Detection of high-risk HPV in FFPE specimens of various tumours using the BD Onclarity™ HPV Assay
por: van der Geize, Robert, et al.
Publicado: (2022)

Simple approximation of sample size for precise estimates of SARS-CoV-2 infection from point-seroprevalence studies
por: Nikiforuk, A.M., et al.
Publicado: (2022)

Temporal lineage replacements and dominance of imported variants of concern during the COVID-19 pandemic in Kenya
por: Kimita, Gathii, et al.
Publicado: (2022)

Synaptotagmin-7–mediated activation of spontaneous NMDAR currents is disrupted in bipolar disorder susceptibility variants
por: Wang, Qiu-Wen, et al.
Publicado: (2021)

Ex vivo 3D scanning and specimen mapping in anatomic pathology
por: Perez, Alexander N., et al.
Publicado: (2023)

A Sanger-based approach for scaling up screening of SARS-CoV-2 variants of interest and concern
por: Bezerra, Matheus Filgueira, et al.
Publicado: (2021)

Structural analysis of spike proteins from SARS-CoV-2 variants of concern highlighting their functional alterations
por: Solanki, Kundan, et al.
Publicado: (2022)

Prospective evaluation of specimen pooling strategy for detection of SARS-CoV-2 using pools of five and six specimens
por: Meletis, Georgios, et al.
Publicado: (2021)

Optimizing the Illumina COVIDSeq laboratorial and bioinformatics pipeline on thousands of samples for SARS-CoV-2 Variants of Concern tracking
por: Donzelli, Sara, et al.
Publicado: (2022)

Prolonged replication of BA.1 and BA.2 Omicron lineages compared to Delta variant in nasopharyngeal samples from COVID-19 patients
por: Teyssou, Elisa, et al.
Publicado: (2023)

Characterizing Longitudinal Antibody Responses in Recovered Individuals Following COVID-19 Infection and Single-Dose Vaccination: A Prospective Cohort Study
por: Olmstead, Andrea D., et al.
Publicado: (2022)

SARS-CoV-2 multiplex RT-PCR to detect variants of concern (VOCs) in Malaysia, between January to May 2021
por: Fu, Jolene Yin Ling, et al.
Publicado: (2022)

Skin-patch delivered subunit vaccine induces broadly neutralising antibodies against SARS-CoV-2 variants of concern
por: McMillan, Christopher L.D., et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_minf46e6elgccu13r2vfpschh0