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Decoding intra-tumoral spatial heterogeneity on radiological images using the Hilbert curve
BACKGROUND: Current intra-tumoral heterogeneous feature extraction in radiology is limited to the use of a single slice or the region of interest within a few context-associated slices, and the decoding of intra-tumoral spatial heterogeneity using whole tumor samples is rare. We aim to propose a mat...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer International Publishing
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8557226/ https://www.ncbi.nlm.nih.gov/pubmed/34716809 http://dx.doi.org/10.1186/s13244-021-01100-8 |
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author | Wang, Lu Xu, Nan Song, Jiangdian |
author_facet | Wang, Lu Xu, Nan Song, Jiangdian |
author_sort | Wang, Lu |
collection | PubMed |
description | BACKGROUND: Current intra-tumoral heterogeneous feature extraction in radiology is limited to the use of a single slice or the region of interest within a few context-associated slices, and the decoding of intra-tumoral spatial heterogeneity using whole tumor samples is rare. We aim to propose a mathematical model of space-filling curve-based spatial correspondence mapping to interpret intra-tumoral spatial locality and heterogeneity. METHODS: A Hilbert curve-based approach was employed to decode and visualize intra-tumoral spatial heterogeneity by expanding the tumor volume to a two-dimensional (2D) matrix in voxels while preserving the spatial locality of the neighboring voxels. The proposed method was validated using three-dimensional (3D) volumes constructed from lung nodules from the LIDC-IDRI dataset, regular axial plane images, and 3D blocks. RESULTS: Dimensionality reduction of the Hilbert volume with a single regular axial plane image showed a sparse and scattered pixel distribution on the corresponding 2D matrix. However, for 3D blocks and lung tumor inside the volume, the dimensionality reduction to the 2D matrix indicated regular and concentrated squares and rectangles. For classification into benign and malignant masses using lung nodules from the LIDC-IDRI dataset, the Inception-V4 indicated that the Hilbert matrix images improved accuracy (85.54% vs. 73.22%, p < 0.001) compared to the original CT images of the test dataset. CONCLUSIONS: Our study indicates that Hilbert curve-based spatial correspondence mapping is promising for decoding intra-tumoral spatial heterogeneity of partial or whole tumor samples on radiological images. This spatial-locality-preserving approach for voxel expansion enables existing radiomics and convolution neural networks to filter structured and spatially correlated high-dimensional intra-tumoral heterogeneity. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13244-021-01100-8. |
format | Online Article Text |
id | pubmed-8557226 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Springer International Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-85572262021-11-15 Decoding intra-tumoral spatial heterogeneity on radiological images using the Hilbert curve Wang, Lu Xu, Nan Song, Jiangdian Insights Imaging Original Article BACKGROUND: Current intra-tumoral heterogeneous feature extraction in radiology is limited to the use of a single slice or the region of interest within a few context-associated slices, and the decoding of intra-tumoral spatial heterogeneity using whole tumor samples is rare. We aim to propose a mathematical model of space-filling curve-based spatial correspondence mapping to interpret intra-tumoral spatial locality and heterogeneity. METHODS: A Hilbert curve-based approach was employed to decode and visualize intra-tumoral spatial heterogeneity by expanding the tumor volume to a two-dimensional (2D) matrix in voxels while preserving the spatial locality of the neighboring voxels. The proposed method was validated using three-dimensional (3D) volumes constructed from lung nodules from the LIDC-IDRI dataset, regular axial plane images, and 3D blocks. RESULTS: Dimensionality reduction of the Hilbert volume with a single regular axial plane image showed a sparse and scattered pixel distribution on the corresponding 2D matrix. However, for 3D blocks and lung tumor inside the volume, the dimensionality reduction to the 2D matrix indicated regular and concentrated squares and rectangles. For classification into benign and malignant masses using lung nodules from the LIDC-IDRI dataset, the Inception-V4 indicated that the Hilbert matrix images improved accuracy (85.54% vs. 73.22%, p < 0.001) compared to the original CT images of the test dataset. CONCLUSIONS: Our study indicates that Hilbert curve-based spatial correspondence mapping is promising for decoding intra-tumoral spatial heterogeneity of partial or whole tumor samples on radiological images. This spatial-locality-preserving approach for voxel expansion enables existing radiomics and convolution neural networks to filter structured and spatially correlated high-dimensional intra-tumoral heterogeneity. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13244-021-01100-8. Springer International Publishing 2021-10-30 /pmc/articles/PMC8557226/ /pubmed/34716809 http://dx.doi.org/10.1186/s13244-021-01100-8 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Original Article Wang, Lu Xu, Nan Song, Jiangdian Decoding intra-tumoral spatial heterogeneity on radiological images using the Hilbert curve |
title | Decoding intra-tumoral spatial heterogeneity on radiological images using the Hilbert curve |
title_full | Decoding intra-tumoral spatial heterogeneity on radiological images using the Hilbert curve |
title_fullStr | Decoding intra-tumoral spatial heterogeneity on radiological images using the Hilbert curve |
title_full_unstemmed | Decoding intra-tumoral spatial heterogeneity on radiological images using the Hilbert curve |
title_short | Decoding intra-tumoral spatial heterogeneity on radiological images using the Hilbert curve |
title_sort | decoding intra-tumoral spatial heterogeneity on radiological images using the hilbert curve |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8557226/ https://www.ncbi.nlm.nih.gov/pubmed/34716809 http://dx.doi.org/10.1186/s13244-021-01100-8 |
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