Cargando…

Comparative analysis of transcriptomic data shows the effects of multiple evolutionary selection processes on codon usage in Marsupenaeus japonicus and Marsupenaeus pulchricaudatus

BACKGROUND: Kuruma shrimp, a major commercial shrimp species in the world, has two cryptic or sibling species, Marsupenaeus japonicus and Marsupenaeus pulchricaudatus. Codon usage analysis would contribute to our understanding of the genetic and evolutionary characteristics of the two Marsupenaeus s...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wang, Panpan, Mao, Yong, Su, Yongquan, Wang, Jun
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2021
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8557549/ https://www.ncbi.nlm.nih.gov/pubmed/34717552 http://dx.doi.org/10.1186/s12864-021-08106-y

Ejemplares similares

Genome and transcriptome assemblies of the kuruma shrimp, Marsupenaeus japonicus
por: Kawato, Satoshi, et al.
Publicado: (2021)

Air Exposure Affects Physiological Responses, Innate Immunity, Apoptosis and DNA Methylation of Kuruma Shrimp, Marsupenaeus japonicus
por: Wang, Panpan, et al.
Publicado: (2020)

Transcriptomic Analysis of the Kuruma Prawn Marsupenaeus japonicus Reveals Possible Peripheral Regulation of the Ovary
por: Tsutsui, Naoaki, et al.
Publicado: (2020)

Syntenin is involved in the bacteria clearance response of kuruma shrimp (Marsupenaeus japonicus)
por: Liu, Qian, et al.
Publicado: (2015)

Fine-Scale Population Genetic Structure and Parapatric Cryptic Species of Kuruma Shrimp (Marsupenaeus japonicus), Along the Northwestern Pacific Coast of China
por: Wang, Panpan, et al.
Publicado: (2020)

Hyper-expansion of large DNA segments in the genome of kuruma shrimp, Marsupenaeus japonicus
por: Koyama, Takashi, et al.
Publicado: (2010)

Regulation Mechanism of Dopamine Receptor 1 in Low Temperature Response of Marsupenaeus japonicus
por: Ren, Xianyun, et al.
Publicado: (2023)

TRBP and eIF6 Homologue in Marsupenaeus japonicus Play Crucial Roles in Antiviral Response
por: Wang, Shuai, et al.
Publicado: (2012)

Impacts of Methyl Farnesoate and 20-Hydroxyecdysone on Larval Mortality and Metamorphosis in the Kuruma Prawn Marsupenaeus japonicus
por: Toyota, Kenji, et al.
Publicado: (2020)

The Molecular Mechanism of Hemocyte Immune Response in Marsupenaeus japonicus Infected With Decapod Iridescent Virus 1
por: He, Zihao, et al.
Publicado: (2021)

The complete mitochondrial genome of the cryptic species (Form II) in kuruma shrimp Marsupenaeus japonicus (Decapoda: Penaeidae)
por: Zhong, Shengping, et al.
Publicado: (2018)

A Galectin from the Kuruma Shrimp (Marsupenaeus japonicus) Functions as an Opsonin and Promotes Bacterial Clearance from Hemolymph
por: Shi, Xiu-Zhen, et al.
Publicado: (2014)

Metabolomic Investigation of Ultraviolet Ray-Inactivated White Spot Syndrome Virus-Induced Trained Immunity in Marsupenaeus japonicus
por: Zang, Shaoqing, et al.
Publicado: (2022)

Identification and Molecular Characterization of a Pellino Protein in Kuruma Prawn (Marsupenaeus Japonicus) in Response to White Spot Syndrome Virus and Vibrio Parahaemolyticus Infection
por: Zhang, Heqian, et al.
Publicado: (2020)

The polymeric immunoglobulin receptor-like protein from Marsupenaeus japonicus is a receptor for white spot syndrome virus infection
por: Niu, Guo-Juan, et al.
Publicado: (2019)

Identification and characterization of a novel L-type lectin (MjLTL2) from kuruma shrimp (Marsupenaeus japonicus)
por: Xu, Sen, et al.
Publicado: (2020)

Expression and Purification of Active Recombinant Cathepsin C (Dipeptidyl Aminopeptidase I) of Kuruma Prawn Marsupenaeus japonicus in Insect Cells
por: Qiu, Gao-Feng, et al.
Publicado: (2009)

Identification of antigenic domains and peptides from VP15 of white spot syndrome virus and their antiviral effects in Marsupenaeus japonicus
por: Boonyakida, Jirayu, et al.
Publicado: (2021)

Preparation, Purification and Characterization of Antibacterial and ACE Inhibitory Peptides from Head Protein Hydrolysate of Kuruma Shrimp, Marsupenaeus japonicus
por: Zhou, Jie, et al.
Publicado: (2023)

Probiotic Effects of a Marine Purple Non-Sulfur Bacterium, Rhodovulum sulfidophilum KKMI01, on Kuruma Shrimp (Marsupenaeus japonicus)
por: Koga, Aoi, et al.
Publicado: (2022)

Pathogen recognition of a novel C-type lectin from Marsupenaeus japonicus reveals the divergent sugar-binding specificity of QAP motif
por: Alenton, Rod Russel R., et al.
Publicado: (2017)

Studies on nitric oxide synthase activity in haemocytes of shrimps Fenneropenaeus chinensis and Marsupenaeus japonicus after white spot syndrome virus infection
por: Jiang, Guojian, et al.
Publicado: (2006)

KIFC1 is essential for normal spermatogenesis and its depletion results in early germ cell apoptosis in the Kuruma shrimp, Penaeus (Marsupenaeus) japonicus
por: Hao, Shuang-Li, et al.
Publicado: (2019)

Effects of the Monomeric Components of Poly-hydroxybutyrate-co-hydroxyhexanoate on the Growth of Vibrio penaeicida In Vitro and on the Survival of Infected Kuruma Shrimp (Marsupenaeus japonicus)
por: Fukami, Kimio, et al.
Publicado: (2021)

Integrated analysis of intestinal microbiota and metabolomic reveals that decapod iridescent virus 1 (DIV1) infection induces secondary bacterial infection and metabolic reprogramming in Marsupenaeus japonicus
por: He, Zihao, et al.
Publicado: (2022)

Integrated Analysis of mRNA-Seq and MiRNA-Seq Reveals the Molecular Mechanism of the Intestinal Immune Response in Marsupenaeus japonicus Under Decapod Iridescent Virus 1 Infection
por: He, Zihao, et al.
Publicado: (2022)

Chemotaxis Assay for Marsupenaeus japonicas Hemocytes and Application for the Development of an Oral Immunostimulant Against White Spot Syndrome Virus
por: Imai, Takashi, et al.
Publicado: (2020)

Dietary β-Hydroxy-β-Methylbutyrate Supplementation Affects Growth Performance, Digestion, TOR Pathway, and Muscle Quality in Kuruma Shrimp (Marsupenaeus japonicas) Fed a Low Protein Diet
por: Mu, Hua, et al.
Publicado: (2023)

Multiple Evolutionary Selections Involved in Synonymous Codon Usages in the Streptococcus agalactiae Genome
por: Ma, Yan-Ping, et al.
Publicado: (2016)

The Effect of Multiple Evolutionary Selections on Synonymous Codon Usage of Genes in the Mycoplasma bovis Genome
por: Zhou, Jian-hua, et al.
Publicado: (2014)

Synonymous Codon Usage Bias in the Plastid Genome is Unrelated to Gene Structure and Shows Evolutionary Heterogeneity
por: Qi, Yueying, et al.
Publicado: (2015)

Synonymous Codon Usages as an Evolutionary Dynamic for Chlamydiaceae
por: Li, Zhaocai, et al.
Publicado: (2018)

Evolutionary dynamics of codon usages for peste des petits ruminants virus
por: Wang, Xin, et al.
Publicado: (2022)

Codon usage is associated with the evolutionary age of genes in metazoan genomes
por: Prat, Yosef, et al.
Publicado: (2009)

Evolutionary Regression and Species-Specific Codon Usage of TLR15
por: Voogdt, Carlos G. P., et al.
Publicado: (2018)

An Evolutionary Perspective of Codon Usage Pattern, Dinucleotide Composition and Codon Pair Bias in Prunus Necrotic Ringspot Virus
por: Wang, Lingqi, et al.
Publicado: (2023)

Evidence that Natural Selection on Codon Usage in Drosophila pseudoobscura Varies Across Codons
por: Kliman, Richard M.
Publicado: (2014)

Modal Codon Usage: Assessing the Typical Codon Usage of a Genome
por: Davis, James J., et al.
Publicado: (2010)

Selective forces and mutational biases drive stop codon usage in the human genome: a comparison with sense codon usage
por: Trotta, Edoardo
Publicado: (2016)

Rotavirus A Genome Segments Show Distinct Segregation and Codon Usage Patterns
por: Hoxie, Irene, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_d72hfn1lh9qk5gn23jig75aru4