Cargando…

Gene4HL: An Integrated Genetic Database for Hearing Loss

Hearing loss (HL) is one of the most common disabilities in the world. In industrialized countries, HL occurs in 1–2/1,000 newborns, and approximately 60% of HL is caused by genetic factors. Next generation sequencing (NGS) has been widely used to identify many candidate genes and variants in patien...

Descripción completa

Detalles Bibliográficos
Autores principales: Huang, Shasha, Zhao, Guihu, Wu, Jie, Li, Kuokuo, Wang, Qiuquan, Fu, Ying, Zhang, Honglei, Bi, Qingling, Li, Xiaohong, Wang, Weiqian, Guo, Chang, Zhang, Dejun, Wu, Lihua, Li, Xiaoge, Xu, Huiyan, Han, Mingyu, Wang, Xin, Lei, Chen, Qiu, Xiaofang, Li, Yang, Li, Jinchen, Dai, Pu, Yuan, Yongyi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8558372/
https://www.ncbi.nlm.nih.gov/pubmed/34733322
http://dx.doi.org/10.3389/fgene.2021.773009
_version_ 1784592545309786112
author Huang, Shasha
Zhao, Guihu
Wu, Jie
Li, Kuokuo
Wang, Qiuquan
Fu, Ying
Zhang, Honglei
Bi, Qingling
Li, Xiaohong
Wang, Weiqian
Guo, Chang
Zhang, Dejun
Wu, Lihua
Li, Xiaoge
Xu, Huiyan
Han, Mingyu
Wang, Xin
Lei, Chen
Qiu, Xiaofang
Li, Yang
Li, Jinchen
Dai, Pu
Yuan, Yongyi
author_facet Huang, Shasha
Zhao, Guihu
Wu, Jie
Li, Kuokuo
Wang, Qiuquan
Fu, Ying
Zhang, Honglei
Bi, Qingling
Li, Xiaohong
Wang, Weiqian
Guo, Chang
Zhang, Dejun
Wu, Lihua
Li, Xiaoge
Xu, Huiyan
Han, Mingyu
Wang, Xin
Lei, Chen
Qiu, Xiaofang
Li, Yang
Li, Jinchen
Dai, Pu
Yuan, Yongyi
author_sort Huang, Shasha
collection PubMed
description Hearing loss (HL) is one of the most common disabilities in the world. In industrialized countries, HL occurs in 1–2/1,000 newborns, and approximately 60% of HL is caused by genetic factors. Next generation sequencing (NGS) has been widely used to identify many candidate genes and variants in patients with HL, but the data are scattered in multitudinous studies. It is a challenge for scientists, clinicians, and biologists to easily obtain and analyze HL genes and variant data from these studies. Thus, we developed a one-stop database of HL-related genes and variants, Gene4HL (http://www.genemed.tech/gene4hl/), making it easy to catalog, search, browse and analyze the genetic data. Gene4HL integrates the detailed genetic and clinical data of 326 HL-related genes from 1,608 published studies, along with 62 popular genetic data sources to provide comprehensive knowledge of candidate genes and variants associated with HL. Additionally, Gene4HL supports the users to analyze their own genetic engineering network data, performs comprehensive annotation, and prioritizes candidate genes and variations using custom parameters. Thus, Gene4HL can help users explain the function of HL genes and the clinical significance of variants by correlating the genotypes and phenotypes in humans.
format Online
Article
Text
id pubmed-8558372
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-85583722021-11-02 Gene4HL: An Integrated Genetic Database for Hearing Loss Huang, Shasha Zhao, Guihu Wu, Jie Li, Kuokuo Wang, Qiuquan Fu, Ying Zhang, Honglei Bi, Qingling Li, Xiaohong Wang, Weiqian Guo, Chang Zhang, Dejun Wu, Lihua Li, Xiaoge Xu, Huiyan Han, Mingyu Wang, Xin Lei, Chen Qiu, Xiaofang Li, Yang Li, Jinchen Dai, Pu Yuan, Yongyi Front Genet Genetics Hearing loss (HL) is one of the most common disabilities in the world. In industrialized countries, HL occurs in 1–2/1,000 newborns, and approximately 60% of HL is caused by genetic factors. Next generation sequencing (NGS) has been widely used to identify many candidate genes and variants in patients with HL, but the data are scattered in multitudinous studies. It is a challenge for scientists, clinicians, and biologists to easily obtain and analyze HL genes and variant data from these studies. Thus, we developed a one-stop database of HL-related genes and variants, Gene4HL (http://www.genemed.tech/gene4hl/), making it easy to catalog, search, browse and analyze the genetic data. Gene4HL integrates the detailed genetic and clinical data of 326 HL-related genes from 1,608 published studies, along with 62 popular genetic data sources to provide comprehensive knowledge of candidate genes and variants associated with HL. Additionally, Gene4HL supports the users to analyze their own genetic engineering network data, performs comprehensive annotation, and prioritizes candidate genes and variations using custom parameters. Thus, Gene4HL can help users explain the function of HL genes and the clinical significance of variants by correlating the genotypes and phenotypes in humans. Frontiers Media S.A. 2021-10-18 /pmc/articles/PMC8558372/ /pubmed/34733322 http://dx.doi.org/10.3389/fgene.2021.773009 Text en Copyright © 2021 Huang, Zhao, Wu, Li, Wang, Fu, Zhang, Bi, Li, Wang, Guo, Zhang, Wu, Li, Xu, Han, Wang, Lei, Qiu, Li, Li, Dai and Yuan. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Huang, Shasha
Zhao, Guihu
Wu, Jie
Li, Kuokuo
Wang, Qiuquan
Fu, Ying
Zhang, Honglei
Bi, Qingling
Li, Xiaohong
Wang, Weiqian
Guo, Chang
Zhang, Dejun
Wu, Lihua
Li, Xiaoge
Xu, Huiyan
Han, Mingyu
Wang, Xin
Lei, Chen
Qiu, Xiaofang
Li, Yang
Li, Jinchen
Dai, Pu
Yuan, Yongyi
Gene4HL: An Integrated Genetic Database for Hearing Loss
title Gene4HL: An Integrated Genetic Database for Hearing Loss
title_full Gene4HL: An Integrated Genetic Database for Hearing Loss
title_fullStr Gene4HL: An Integrated Genetic Database for Hearing Loss
title_full_unstemmed Gene4HL: An Integrated Genetic Database for Hearing Loss
title_short Gene4HL: An Integrated Genetic Database for Hearing Loss
title_sort gene4hl: an integrated genetic database for hearing loss
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8558372/
https://www.ncbi.nlm.nih.gov/pubmed/34733322
http://dx.doi.org/10.3389/fgene.2021.773009
work_keys_str_mv AT huangshasha gene4hlanintegratedgeneticdatabaseforhearingloss
AT zhaoguihu gene4hlanintegratedgeneticdatabaseforhearingloss
AT wujie gene4hlanintegratedgeneticdatabaseforhearingloss
AT likuokuo gene4hlanintegratedgeneticdatabaseforhearingloss
AT wangqiuquan gene4hlanintegratedgeneticdatabaseforhearingloss
AT fuying gene4hlanintegratedgeneticdatabaseforhearingloss
AT zhanghonglei gene4hlanintegratedgeneticdatabaseforhearingloss
AT biqingling gene4hlanintegratedgeneticdatabaseforhearingloss
AT lixiaohong gene4hlanintegratedgeneticdatabaseforhearingloss
AT wangweiqian gene4hlanintegratedgeneticdatabaseforhearingloss
AT guochang gene4hlanintegratedgeneticdatabaseforhearingloss
AT zhangdejun gene4hlanintegratedgeneticdatabaseforhearingloss
AT wulihua gene4hlanintegratedgeneticdatabaseforhearingloss
AT lixiaoge gene4hlanintegratedgeneticdatabaseforhearingloss
AT xuhuiyan gene4hlanintegratedgeneticdatabaseforhearingloss
AT hanmingyu gene4hlanintegratedgeneticdatabaseforhearingloss
AT wangxin gene4hlanintegratedgeneticdatabaseforhearingloss
AT leichen gene4hlanintegratedgeneticdatabaseforhearingloss
AT qiuxiaofang gene4hlanintegratedgeneticdatabaseforhearingloss
AT liyang gene4hlanintegratedgeneticdatabaseforhearingloss
AT lijinchen gene4hlanintegratedgeneticdatabaseforhearingloss
AT daipu gene4hlanintegratedgeneticdatabaseforhearingloss
AT yuanyongyi gene4hlanintegratedgeneticdatabaseforhearingloss