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Integrative Characterization of the Role of IL27 In Melanoma Using Bioinformatics Analysis

BACKGROUND: IL27 has been reported to play dual roles in cancer; however, its effects on the tumor microenvironment (TME), immunotherapy, and prognosis in melanoma remain largely unclear. This study was aimed to uncover the effects of IL27 on TME, immunotherapy and prognosis in patients with melanom...

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Autores principales: Dong, Chunyu, Dang, Dan, Zhao, Xuesong, Wang, Yuanyuan, Wang, Zhijun, Zhang, Chuan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8558420/
https://www.ncbi.nlm.nih.gov/pubmed/34733272
http://dx.doi.org/10.3389/fimmu.2021.713001
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author Dong, Chunyu
Dang, Dan
Zhao, Xuesong
Wang, Yuanyuan
Wang, Zhijun
Zhang, Chuan
author_facet Dong, Chunyu
Dang, Dan
Zhao, Xuesong
Wang, Yuanyuan
Wang, Zhijun
Zhang, Chuan
author_sort Dong, Chunyu
collection PubMed
description BACKGROUND: IL27 has been reported to play dual roles in cancer; however, its effects on the tumor microenvironment (TME), immunotherapy, and prognosis in melanoma remain largely unclear. This study was aimed to uncover the effects of IL27 on TME, immunotherapy and prognosis in patients with melanoma. METHODS: RNA-seq data, drug sensitivity data, and clinical data were obtained from TCGA, GEO, CCLE, and CTRP. Log-rank test was used to determine the survival value of IL27. Univariate and multivariate Cox regression analyses were employed to determine the independent predictors of survival outcomes. DAVID and GSEA were used to perform gene set functional annotations. ssGSEA was used to explore the association between IL27 and immune infiltrates. ConsensusClusterPlus was used to classify melanoma tissues into hot tumors or cold tumors. RESULTS: Clinically, IL27 was negatively correlated with Breslow depth (P = 0.00042) and positively associated with response to radiotherapy (P = 0.038). High IL27 expression showed an improved survival outcome (P = 0.00016), and could serve as an independent predictor of survival outcomes (hazard ratio: 0.32 - 0.88, P = 0.015). Functionally, elevated IL27 expression could induce an enhanced immune response and pyroptosis (R = 0.64, P = 1.2e-55), autophagy (R = 0.37, P = 7.1e-17) and apoptosis (R = 0.47, P = 1.1e-27) in patients with melanoma. Mechanistically, elevated IL27 expression was positively correlated with cytotoxic cytokines (including INFG and GZMB), enhanced immune infiltrates, and elevated CD8/Treg ratio (R = 0.14, P = 0.02), possibly driving CD8(+) T cell infiltration by suppressing β-catenin signaling in the TME. Furthermore, IL27 was significantly associated with hot tumor state, multiple predictors of response to immunotherapy, and improved drug response in patients with melanoma. CONCLUSIONS: IL27 was correlated with enriched CD8(+) T cells, desirable therapeutic response and improved prognosis. It thus can be utilized as a promising modulator in the development of cytokine-based immunotherapy for melanoma.
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spelling pubmed-85584202021-11-02 Integrative Characterization of the Role of IL27 In Melanoma Using Bioinformatics Analysis Dong, Chunyu Dang, Dan Zhao, Xuesong Wang, Yuanyuan Wang, Zhijun Zhang, Chuan Front Immunol Immunology BACKGROUND: IL27 has been reported to play dual roles in cancer; however, its effects on the tumor microenvironment (TME), immunotherapy, and prognosis in melanoma remain largely unclear. This study was aimed to uncover the effects of IL27 on TME, immunotherapy and prognosis in patients with melanoma. METHODS: RNA-seq data, drug sensitivity data, and clinical data were obtained from TCGA, GEO, CCLE, and CTRP. Log-rank test was used to determine the survival value of IL27. Univariate and multivariate Cox regression analyses were employed to determine the independent predictors of survival outcomes. DAVID and GSEA were used to perform gene set functional annotations. ssGSEA was used to explore the association between IL27 and immune infiltrates. ConsensusClusterPlus was used to classify melanoma tissues into hot tumors or cold tumors. RESULTS: Clinically, IL27 was negatively correlated with Breslow depth (P = 0.00042) and positively associated with response to radiotherapy (P = 0.038). High IL27 expression showed an improved survival outcome (P = 0.00016), and could serve as an independent predictor of survival outcomes (hazard ratio: 0.32 - 0.88, P = 0.015). Functionally, elevated IL27 expression could induce an enhanced immune response and pyroptosis (R = 0.64, P = 1.2e-55), autophagy (R = 0.37, P = 7.1e-17) and apoptosis (R = 0.47, P = 1.1e-27) in patients with melanoma. Mechanistically, elevated IL27 expression was positively correlated with cytotoxic cytokines (including INFG and GZMB), enhanced immune infiltrates, and elevated CD8/Treg ratio (R = 0.14, P = 0.02), possibly driving CD8(+) T cell infiltration by suppressing β-catenin signaling in the TME. Furthermore, IL27 was significantly associated with hot tumor state, multiple predictors of response to immunotherapy, and improved drug response in patients with melanoma. CONCLUSIONS: IL27 was correlated with enriched CD8(+) T cells, desirable therapeutic response and improved prognosis. It thus can be utilized as a promising modulator in the development of cytokine-based immunotherapy for melanoma. Frontiers Media S.A. 2021-10-18 /pmc/articles/PMC8558420/ /pubmed/34733272 http://dx.doi.org/10.3389/fimmu.2021.713001 Text en Copyright © 2021 Dong, Dang, Zhao, Wang, Wang and Zhang https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Dong, Chunyu
Dang, Dan
Zhao, Xuesong
Wang, Yuanyuan
Wang, Zhijun
Zhang, Chuan
Integrative Characterization of the Role of IL27 In Melanoma Using Bioinformatics Analysis
title Integrative Characterization of the Role of IL27 In Melanoma Using Bioinformatics Analysis
title_full Integrative Characterization of the Role of IL27 In Melanoma Using Bioinformatics Analysis
title_fullStr Integrative Characterization of the Role of IL27 In Melanoma Using Bioinformatics Analysis
title_full_unstemmed Integrative Characterization of the Role of IL27 In Melanoma Using Bioinformatics Analysis
title_short Integrative Characterization of the Role of IL27 In Melanoma Using Bioinformatics Analysis
title_sort integrative characterization of the role of il27 in melanoma using bioinformatics analysis
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8558420/
https://www.ncbi.nlm.nih.gov/pubmed/34733272
http://dx.doi.org/10.3389/fimmu.2021.713001
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