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Coexpression network analysis identified lncRNAs-mRNAs with potential relevance in African ancestry prostate cancer

AIM: This study aims to investigate similarities and differences using lncRNA and mRNA coexpression network analysis in African ancestry (AA) and European ancestry (EA) among prostate cancer (PCa) patients. METHODS: We performed weighted gene coexpression network analysis of the expression from 49 o...

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Detalles Bibliográficos
Autores principales: Parra-Medina, Rafael, López-Kleine, Liliana, Ramírez-Clavijo, Sandra, Payán-Gómez, César
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Future Science Ltd 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8558852/
https://www.ncbi.nlm.nih.gov/pubmed/34737889
http://dx.doi.org/10.2144/fsoa-2021-0076
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author Parra-Medina, Rafael
López-Kleine, Liliana
Ramírez-Clavijo, Sandra
Payán-Gómez, César
author_facet Parra-Medina, Rafael
López-Kleine, Liliana
Ramírez-Clavijo, Sandra
Payán-Gómez, César
author_sort Parra-Medina, Rafael
collection PubMed
description AIM: This study aims to investigate similarities and differences using lncRNA and mRNA coexpression network analysis in African ancestry (AA) and European ancestry (EA) among prostate cancer (PCa) patients. METHODS: We performed weighted gene coexpression network analysis of the expression from 49 of AA and 49 of EA to identify lncRNAs-mRNAs. RESULTS: 27 lncRNAs and 36 mRNAs were highly expressed in patients of AA. Two mRNAs and their antisense lncRNAs were expressed. Additionally, seven mRNAs were DE or coexpressed and had an impact on survival. CONCLUSION: We present a list of lncRNAs and mRNAs that were DE and coexpressed when comparing patients of AA and EA, and these data are a resource for future studies to understand the role of lncRNAs.
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spelling pubmed-85588522021-11-03 Coexpression network analysis identified lncRNAs-mRNAs with potential relevance in African ancestry prostate cancer Parra-Medina, Rafael López-Kleine, Liliana Ramírez-Clavijo, Sandra Payán-Gómez, César Future Sci OA Research Article AIM: This study aims to investigate similarities and differences using lncRNA and mRNA coexpression network analysis in African ancestry (AA) and European ancestry (EA) among prostate cancer (PCa) patients. METHODS: We performed weighted gene coexpression network analysis of the expression from 49 of AA and 49 of EA to identify lncRNAs-mRNAs. RESULTS: 27 lncRNAs and 36 mRNAs were highly expressed in patients of AA. Two mRNAs and their antisense lncRNAs were expressed. Additionally, seven mRNAs were DE or coexpressed and had an impact on survival. CONCLUSION: We present a list of lncRNAs and mRNAs that were DE and coexpressed when comparing patients of AA and EA, and these data are a resource for future studies to understand the role of lncRNAs. Future Science Ltd 2021-09-22 /pmc/articles/PMC8558852/ /pubmed/34737889 http://dx.doi.org/10.2144/fsoa-2021-0076 Text en © 2021 César Payán-Gómez https://creativecommons.org/licenses/by/4.0/This work is licensed under the Creative Commons Attribution 4.0 License (https://creativecommons.org/licenses/by/4.0/)
spellingShingle Research Article
Parra-Medina, Rafael
López-Kleine, Liliana
Ramírez-Clavijo, Sandra
Payán-Gómez, César
Coexpression network analysis identified lncRNAs-mRNAs with potential relevance in African ancestry prostate cancer
title Coexpression network analysis identified lncRNAs-mRNAs with potential relevance in African ancestry prostate cancer
title_full Coexpression network analysis identified lncRNAs-mRNAs with potential relevance in African ancestry prostate cancer
title_fullStr Coexpression network analysis identified lncRNAs-mRNAs with potential relevance in African ancestry prostate cancer
title_full_unstemmed Coexpression network analysis identified lncRNAs-mRNAs with potential relevance in African ancestry prostate cancer
title_short Coexpression network analysis identified lncRNAs-mRNAs with potential relevance in African ancestry prostate cancer
title_sort coexpression network analysis identified lncrnas-mrnas with potential relevance in african ancestry prostate cancer
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8558852/
https://www.ncbi.nlm.nih.gov/pubmed/34737889
http://dx.doi.org/10.2144/fsoa-2021-0076
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