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Coexpression network analysis identified lncRNAs-mRNAs with potential relevance in African ancestry prostate cancer
AIM: This study aims to investigate similarities and differences using lncRNA and mRNA coexpression network analysis in African ancestry (AA) and European ancestry (EA) among prostate cancer (PCa) patients. METHODS: We performed weighted gene coexpression network analysis of the expression from 49 o...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Future Science Ltd
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8558852/ https://www.ncbi.nlm.nih.gov/pubmed/34737889 http://dx.doi.org/10.2144/fsoa-2021-0076 |
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author | Parra-Medina, Rafael López-Kleine, Liliana Ramírez-Clavijo, Sandra Payán-Gómez, César |
author_facet | Parra-Medina, Rafael López-Kleine, Liliana Ramírez-Clavijo, Sandra Payán-Gómez, César |
author_sort | Parra-Medina, Rafael |
collection | PubMed |
description | AIM: This study aims to investigate similarities and differences using lncRNA and mRNA coexpression network analysis in African ancestry (AA) and European ancestry (EA) among prostate cancer (PCa) patients. METHODS: We performed weighted gene coexpression network analysis of the expression from 49 of AA and 49 of EA to identify lncRNAs-mRNAs. RESULTS: 27 lncRNAs and 36 mRNAs were highly expressed in patients of AA. Two mRNAs and their antisense lncRNAs were expressed. Additionally, seven mRNAs were DE or coexpressed and had an impact on survival. CONCLUSION: We present a list of lncRNAs and mRNAs that were DE and coexpressed when comparing patients of AA and EA, and these data are a resource for future studies to understand the role of lncRNAs. |
format | Online Article Text |
id | pubmed-8558852 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Future Science Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-85588522021-11-03 Coexpression network analysis identified lncRNAs-mRNAs with potential relevance in African ancestry prostate cancer Parra-Medina, Rafael López-Kleine, Liliana Ramírez-Clavijo, Sandra Payán-Gómez, César Future Sci OA Research Article AIM: This study aims to investigate similarities and differences using lncRNA and mRNA coexpression network analysis in African ancestry (AA) and European ancestry (EA) among prostate cancer (PCa) patients. METHODS: We performed weighted gene coexpression network analysis of the expression from 49 of AA and 49 of EA to identify lncRNAs-mRNAs. RESULTS: 27 lncRNAs and 36 mRNAs were highly expressed in patients of AA. Two mRNAs and their antisense lncRNAs were expressed. Additionally, seven mRNAs were DE or coexpressed and had an impact on survival. CONCLUSION: We present a list of lncRNAs and mRNAs that were DE and coexpressed when comparing patients of AA and EA, and these data are a resource for future studies to understand the role of lncRNAs. Future Science Ltd 2021-09-22 /pmc/articles/PMC8558852/ /pubmed/34737889 http://dx.doi.org/10.2144/fsoa-2021-0076 Text en © 2021 César Payán-Gómez https://creativecommons.org/licenses/by/4.0/This work is licensed under the Creative Commons Attribution 4.0 License (https://creativecommons.org/licenses/by/4.0/) |
spellingShingle | Research Article Parra-Medina, Rafael López-Kleine, Liliana Ramírez-Clavijo, Sandra Payán-Gómez, César Coexpression network analysis identified lncRNAs-mRNAs with potential relevance in African ancestry prostate cancer |
title | Coexpression network analysis identified lncRNAs-mRNAs with potential relevance in African ancestry prostate cancer |
title_full | Coexpression network analysis identified lncRNAs-mRNAs with potential relevance in African ancestry prostate cancer |
title_fullStr | Coexpression network analysis identified lncRNAs-mRNAs with potential relevance in African ancestry prostate cancer |
title_full_unstemmed | Coexpression network analysis identified lncRNAs-mRNAs with potential relevance in African ancestry prostate cancer |
title_short | Coexpression network analysis identified lncRNAs-mRNAs with potential relevance in African ancestry prostate cancer |
title_sort | coexpression network analysis identified lncrnas-mrnas with potential relevance in african ancestry prostate cancer |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8558852/ https://www.ncbi.nlm.nih.gov/pubmed/34737889 http://dx.doi.org/10.2144/fsoa-2021-0076 |
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