Cargando…

Variation in nuclear genome size within the Eisenia nordenskioldi complex (Lumbricidae, Annelida)

The size of the nuclear genome in eukaryotes is mostly determined by mobile elements and noncoding sequences and may vary within wide limits. It can differ signif icantly both among higher-order taxa and closely related species within a genus; genome size is known to be uncorrelated with organism co...

Descripción completa

Detalles Bibliográficos
Autores principales: Shekhovtsov, S.V., Efremov, Ya.R., Poluboyarova, T.V., Peltek1, S.E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Federal Research Center Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8558923/
https://www.ncbi.nlm.nih.gov/pubmed/34782884
http://dx.doi.org/10.18699/VJ21.073
_version_ 1784592665199771648
author Shekhovtsov, S.V.
Efremov, Ya.R.
Poluboyarova, T.V.
Peltek1, S.E.
author_facet Shekhovtsov, S.V.
Efremov, Ya.R.
Poluboyarova, T.V.
Peltek1, S.E.
author_sort Shekhovtsov, S.V.
collection PubMed
description The size of the nuclear genome in eukaryotes is mostly determined by mobile elements and noncoding sequences and may vary within wide limits. It can differ signif icantly both among higher-order taxa and closely related species within a genus; genome size is known to be uncorrelated with organism complexity (the so-called C-paradox). Less is known about intraspecif ic variation of this parameter. Typically, genome size is stable within a species, and the known exceptions turn out be cryptic taxa. The Eisenia nordenskioldi complex encompasses several closely related earthworm species. They are widely distributed in the Urals, Siberia, and the Russian Far East, as well as adjacent regions. This complex is characterized by signif icant morphological, chromosomal, ecological, and genetic variation. The aim of our study was to estimate the nuclear genome size in several genetic lineages of the E. nordenskioldi complex using f low cytometry. The genome size in different genetic lineages differed strongly, which supports the hypothesis that they are separate species. We found two groups of lineages, with small (250–500 Mbp) and large (2300–3500 Mbp) genomes. Moreover, different populations within one lineage also demonstrated variation in genome size (15–25 %). We compared the obtained data to phylogenetic trees based on transcriptome data. Genome size in ancestral population was more likely to be big. It increased or decreased independently in different lineages, and these processes could be associated with changes in genome size and/or transition to endogeic lifestyle.
format Online
Article
Text
id pubmed-8558923
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher The Federal Research Center Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences
record_format MEDLINE/PubMed
spelling pubmed-85589232021-11-14 Variation in nuclear genome size within the Eisenia nordenskioldi complex (Lumbricidae, Annelida) Shekhovtsov, S.V. Efremov, Ya.R. Poluboyarova, T.V. Peltek1, S.E. Vavilovskii Zhurnal Genet Selektsii Original Article The size of the nuclear genome in eukaryotes is mostly determined by mobile elements and noncoding sequences and may vary within wide limits. It can differ signif icantly both among higher-order taxa and closely related species within a genus; genome size is known to be uncorrelated with organism complexity (the so-called C-paradox). Less is known about intraspecif ic variation of this parameter. Typically, genome size is stable within a species, and the known exceptions turn out be cryptic taxa. The Eisenia nordenskioldi complex encompasses several closely related earthworm species. They are widely distributed in the Urals, Siberia, and the Russian Far East, as well as adjacent regions. This complex is characterized by signif icant morphological, chromosomal, ecological, and genetic variation. The aim of our study was to estimate the nuclear genome size in several genetic lineages of the E. nordenskioldi complex using f low cytometry. The genome size in different genetic lineages differed strongly, which supports the hypothesis that they are separate species. We found two groups of lineages, with small (250–500 Mbp) and large (2300–3500 Mbp) genomes. Moreover, different populations within one lineage also demonstrated variation in genome size (15–25 %). We compared the obtained data to phylogenetic trees based on transcriptome data. Genome size in ancestral population was more likely to be big. It increased or decreased independently in different lineages, and these processes could be associated with changes in genome size and/or transition to endogeic lifestyle. The Federal Research Center Institute of Cytology and Genetics of Siberian Branch of the Russian Academy of Sciences 2021-10 /pmc/articles/PMC8558923/ /pubmed/34782884 http://dx.doi.org/10.18699/VJ21.073 Text en Copyright © AUTHORS https://creativecommons.org/licenses/by/2.5/This work is licensed under a Creative Commons Attribution 4.0 License
spellingShingle Original Article
Shekhovtsov, S.V.
Efremov, Ya.R.
Poluboyarova, T.V.
Peltek1, S.E.
Variation in nuclear genome size within the Eisenia nordenskioldi complex (Lumbricidae, Annelida)
title Variation in nuclear genome size within the Eisenia nordenskioldi complex (Lumbricidae, Annelida)
title_full Variation in nuclear genome size within the Eisenia nordenskioldi complex (Lumbricidae, Annelida)
title_fullStr Variation in nuclear genome size within the Eisenia nordenskioldi complex (Lumbricidae, Annelida)
title_full_unstemmed Variation in nuclear genome size within the Eisenia nordenskioldi complex (Lumbricidae, Annelida)
title_short Variation in nuclear genome size within the Eisenia nordenskioldi complex (Lumbricidae, Annelida)
title_sort variation in nuclear genome size within the eisenia nordenskioldi complex (lumbricidae, annelida)
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8558923/
https://www.ncbi.nlm.nih.gov/pubmed/34782884
http://dx.doi.org/10.18699/VJ21.073
work_keys_str_mv AT shekhovtsovsv variationinnucleargenomesizewithintheeisenianordenskioldicomplexlumbricidaeannelida
AT efremovyar variationinnucleargenomesizewithintheeisenianordenskioldicomplexlumbricidaeannelida
AT poluboyarovatv variationinnucleargenomesizewithintheeisenianordenskioldicomplexlumbricidaeannelida
AT peltek1se variationinnucleargenomesizewithintheeisenianordenskioldicomplexlumbricidaeannelida