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EPIsembleVis: A geo-visual analysis and comparison of the prediction ensembles of multiple COVID-19 models()

We present EPIsembleVis, a web-based comparative visual analysis tool for evaluating the consistency of multiple COVID-19 prediction models. Our approach analyzes a collection of COVID-19 predictions from different epidemiological models as an ensemble and utilizes two metrics to quantify model perf...

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Autores principales: Xu, Haowen, Berres, Andy, Thakur, Gautam, Sanyal, Jibonananda, Chinthavali, Supriya
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8559418/
https://www.ncbi.nlm.nih.gov/pubmed/34737093
http://dx.doi.org/10.1016/j.jbi.2021.103941
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author Xu, Haowen
Berres, Andy
Thakur, Gautam
Sanyal, Jibonananda
Chinthavali, Supriya
author_facet Xu, Haowen
Berres, Andy
Thakur, Gautam
Sanyal, Jibonananda
Chinthavali, Supriya
author_sort Xu, Haowen
collection PubMed
description We present EPIsembleVis, a web-based comparative visual analysis tool for evaluating the consistency of multiple COVID-19 prediction models. Our approach analyzes a collection of COVID-19 predictions from different epidemiological models as an ensemble and utilizes two metrics to quantify model performance. These metrics include (a) prediction uncertainty (represented as the dispersion of predictions in each ensemble) and (b) prediction error (calculated by comparing individual model predictions with the recorded data). Through an interactive visual interface, our approach provides a data-driven workflow for (a) selecting and constructing the COVID-19 model prediction ensemble based on the spatiotemporal overlap of available predictions of multiple epidemiological models, (b) quantifying the model performance using both the uncertainty of each model prediction ensemble, and the error of each ensemble member that represents individual model predictions, and (c) visualizing the spatiotemporal variability in the projection performance of individual models using a suite of novel ensemble visualization techniques, such as the data availability map, a spatiotemporal textured-tile calendar, multivariate rose chart, and time-series leaflet glyph. We demonstrate the capability of our ensemble visual interface through a case study that investigates the performance of weekly COVID-19 predictions, which are provided through the COVID-19 Forecast Hub UMass-Amherst Influenza Forecasting Center of Excellence [47] for the United States and United States Territories. The EPIsembleVis tool is implemented using open-source web technologies and adaptive system design, rendering it interoperable with Elasticsearch and Kibana for automatically ingesting COVID-19 predictions from online repositories, and it is generalizable for analyzing worldwide projections from more epidemiological models.
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spelling pubmed-85594182021-11-01 EPIsembleVis: A geo-visual analysis and comparison of the prediction ensembles of multiple COVID-19 models() Xu, Haowen Berres, Andy Thakur, Gautam Sanyal, Jibonananda Chinthavali, Supriya J Biomed Inform Article We present EPIsembleVis, a web-based comparative visual analysis tool for evaluating the consistency of multiple COVID-19 prediction models. Our approach analyzes a collection of COVID-19 predictions from different epidemiological models as an ensemble and utilizes two metrics to quantify model performance. These metrics include (a) prediction uncertainty (represented as the dispersion of predictions in each ensemble) and (b) prediction error (calculated by comparing individual model predictions with the recorded data). Through an interactive visual interface, our approach provides a data-driven workflow for (a) selecting and constructing the COVID-19 model prediction ensemble based on the spatiotemporal overlap of available predictions of multiple epidemiological models, (b) quantifying the model performance using both the uncertainty of each model prediction ensemble, and the error of each ensemble member that represents individual model predictions, and (c) visualizing the spatiotemporal variability in the projection performance of individual models using a suite of novel ensemble visualization techniques, such as the data availability map, a spatiotemporal textured-tile calendar, multivariate rose chart, and time-series leaflet glyph. We demonstrate the capability of our ensemble visual interface through a case study that investigates the performance of weekly COVID-19 predictions, which are provided through the COVID-19 Forecast Hub UMass-Amherst Influenza Forecasting Center of Excellence [47] for the United States and United States Territories. The EPIsembleVis tool is implemented using open-source web technologies and adaptive system design, rendering it interoperable with Elasticsearch and Kibana for automatically ingesting COVID-19 predictions from online repositories, and it is generalizable for analyzing worldwide projections from more epidemiological models. Elsevier Inc. 2021-12 2021-11-01 /pmc/articles/PMC8559418/ /pubmed/34737093 http://dx.doi.org/10.1016/j.jbi.2021.103941 Text en © 2021 Elsevier Inc. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Xu, Haowen
Berres, Andy
Thakur, Gautam
Sanyal, Jibonananda
Chinthavali, Supriya
EPIsembleVis: A geo-visual analysis and comparison of the prediction ensembles of multiple COVID-19 models()
title EPIsembleVis: A geo-visual analysis and comparison of the prediction ensembles of multiple COVID-19 models()
title_full EPIsembleVis: A geo-visual analysis and comparison of the prediction ensembles of multiple COVID-19 models()
title_fullStr EPIsembleVis: A geo-visual analysis and comparison of the prediction ensembles of multiple COVID-19 models()
title_full_unstemmed EPIsembleVis: A geo-visual analysis and comparison of the prediction ensembles of multiple COVID-19 models()
title_short EPIsembleVis: A geo-visual analysis and comparison of the prediction ensembles of multiple COVID-19 models()
title_sort episemblevis: a geo-visual analysis and comparison of the prediction ensembles of multiple covid-19 models()
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8559418/
https://www.ncbi.nlm.nih.gov/pubmed/34737093
http://dx.doi.org/10.1016/j.jbi.2021.103941
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