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Radiogenomics Map Reveals the Landscape of m6A Methylation Modification Pattern in Bladder Cancer

We aimed to develop a noninvasive radiomics approach to reveal the m6A methylation status and predict survival outcomes and therapeutic responses in patients. A total of 25 m6A regulators were selected for further analysis, we confirmed that expression level and genomic mutations rate of m6A regulat...

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Autores principales: Ye, Fangdie, Hu, Yun, Gao, Jiahao, Liang, Yingchun, Liu, Yufei, Ou, Yuxi, Cheng, Zhang, Jiang, Haowen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8559436/
https://www.ncbi.nlm.nih.gov/pubmed/34733275
http://dx.doi.org/10.3389/fimmu.2021.722642
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author Ye, Fangdie
Hu, Yun
Gao, Jiahao
Liang, Yingchun
Liu, Yufei
Ou, Yuxi
Cheng, Zhang
Jiang, Haowen
author_facet Ye, Fangdie
Hu, Yun
Gao, Jiahao
Liang, Yingchun
Liu, Yufei
Ou, Yuxi
Cheng, Zhang
Jiang, Haowen
author_sort Ye, Fangdie
collection PubMed
description We aimed to develop a noninvasive radiomics approach to reveal the m6A methylation status and predict survival outcomes and therapeutic responses in patients. A total of 25 m6A regulators were selected for further analysis, we confirmed that expression level and genomic mutations rate of m6A regulators were significantly different between cancer and normal tissues. Besides, we constructed methylation modification models and explored the immune infiltration and biological pathway alteration among different models. The m6A subtypes identified in this study can effectively predict the clinical outcome of bladder cancer (including m6AClusters, geneClusters, and m6Ascore models). In addition, we observed that immune response markers such as PD1 and CTLA4 were significantly corelated with the m6Ascore. Subsequently, a total of 98 obtained digital images were processed to capture the image signature and construct image prediction models based on the m6Ascore classification using a radiomics algorithm. We constructed seven signature radiogenomics models to reveal the m6A methylation status, and the model achieved an area under curve (AUC) degree of 0.887 and 0.762 for the training and test datasets, respectively. The presented radiogenomics models, a noninvasive prediction approach that combined the radiomics signatures and genomics characteristics, displayed satisfactory effective performance for predicting survival outcomes and therapeutic responses of patients. In the future, more interdisciplinary fields concerning the combination of medicine and electronics remains to be explored.
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spelling pubmed-85594362021-11-02 Radiogenomics Map Reveals the Landscape of m6A Methylation Modification Pattern in Bladder Cancer Ye, Fangdie Hu, Yun Gao, Jiahao Liang, Yingchun Liu, Yufei Ou, Yuxi Cheng, Zhang Jiang, Haowen Front Immunol Immunology We aimed to develop a noninvasive radiomics approach to reveal the m6A methylation status and predict survival outcomes and therapeutic responses in patients. A total of 25 m6A regulators were selected for further analysis, we confirmed that expression level and genomic mutations rate of m6A regulators were significantly different between cancer and normal tissues. Besides, we constructed methylation modification models and explored the immune infiltration and biological pathway alteration among different models. The m6A subtypes identified in this study can effectively predict the clinical outcome of bladder cancer (including m6AClusters, geneClusters, and m6Ascore models). In addition, we observed that immune response markers such as PD1 and CTLA4 were significantly corelated with the m6Ascore. Subsequently, a total of 98 obtained digital images were processed to capture the image signature and construct image prediction models based on the m6Ascore classification using a radiomics algorithm. We constructed seven signature radiogenomics models to reveal the m6A methylation status, and the model achieved an area under curve (AUC) degree of 0.887 and 0.762 for the training and test datasets, respectively. The presented radiogenomics models, a noninvasive prediction approach that combined the radiomics signatures and genomics characteristics, displayed satisfactory effective performance for predicting survival outcomes and therapeutic responses of patients. In the future, more interdisciplinary fields concerning the combination of medicine and electronics remains to be explored. Frontiers Media S.A. 2021-10-18 /pmc/articles/PMC8559436/ /pubmed/34733275 http://dx.doi.org/10.3389/fimmu.2021.722642 Text en Copyright © 2021 Ye, Hu, Gao, Liang, Liu, Ou, Cheng and Jiang https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Ye, Fangdie
Hu, Yun
Gao, Jiahao
Liang, Yingchun
Liu, Yufei
Ou, Yuxi
Cheng, Zhang
Jiang, Haowen
Radiogenomics Map Reveals the Landscape of m6A Methylation Modification Pattern in Bladder Cancer
title Radiogenomics Map Reveals the Landscape of m6A Methylation Modification Pattern in Bladder Cancer
title_full Radiogenomics Map Reveals the Landscape of m6A Methylation Modification Pattern in Bladder Cancer
title_fullStr Radiogenomics Map Reveals the Landscape of m6A Methylation Modification Pattern in Bladder Cancer
title_full_unstemmed Radiogenomics Map Reveals the Landscape of m6A Methylation Modification Pattern in Bladder Cancer
title_short Radiogenomics Map Reveals the Landscape of m6A Methylation Modification Pattern in Bladder Cancer
title_sort radiogenomics map reveals the landscape of m6a methylation modification pattern in bladder cancer
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8559436/
https://www.ncbi.nlm.nih.gov/pubmed/34733275
http://dx.doi.org/10.3389/fimmu.2021.722642
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