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Effective sequence similarity detection with strobemers

k-mer-based methods are widely used in bioinformatics for various types of sequence comparisons. However, a single mutation will mutate k consecutive k-mers and make most k-mer-based applications for sequence comparison sensitive to variable mutation rates. Many techniques have been studied to overc...

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Detalles Bibliográficos
Autor principal: Sahlin, Kristoffer
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8559714/
https://www.ncbi.nlm.nih.gov/pubmed/34667119
http://dx.doi.org/10.1101/gr.275648.121