Efficient computation of Faith's phylogenetic diversity with applications in characterizing microbiomes

The number of publicly available microbiome samples is continually growing. As data set size increases, bottlenecks arise in standard analytical pipelines. Faith's phylogenetic diversity (Faith's PD) is a highly utilized phylogenetic alpha diversity metric that has thus far failed to effec...

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Detalles Bibliográficos
Autores principales: Armstrong, George, Cantrell, Kalen, Huang, Shi, McDonald, Daniel, Haiminen, Niina, Carrieri, Anna Paola, Zhu, Qiyun, Gonzalez, Antonio, McGrath, Imran, Beck, Kristen L., Hakim, Daniel, Havulinna, Aki S., Méric, Guillaume, Niiranen, Teemu, Lahti, Leo, Salomaa, Veikko, Jain, Mohit, Inouye, Michael, Swafford, Austin D., Kim, Ho-Cheol, Parida, Laxmi, Vázquez-Baeza, Yoshiki, Knight, Rob
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory Press 2021
Materias:
Method
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8559715/
https://www.ncbi.nlm.nih.gov/pubmed/34479875
http://dx.doi.org/10.1101/gr.275777.121

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