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Accurate Tumor Delineation vs. Rough Volume of Interest Analysis for (18)F-FDG PET/CT Radiomics-Based Prognostic Modeling inNon-Small Cell Lung Cancer

BACKGROUND: The aim of this work was to investigate the ability of building prognostic models in non-small cell lung cancer (NSCLC) using radiomic features from positron emission tomography and computed tomography with 2-deoxy-2-[fluorine-18]fluoro-d-glucose ((18)F-FDG PET/CT) images based on a “rou...

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Autores principales: Sepehri, Shima, Tankyevych, Olena, Iantsen, Andrei, Visvikis, Dimitris, Hatt, Mathieu, Cheze Le Rest, Catherine
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8560021/
https://www.ncbi.nlm.nih.gov/pubmed/34733779
http://dx.doi.org/10.3389/fonc.2021.726865
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author Sepehri, Shima
Tankyevych, Olena
Iantsen, Andrei
Visvikis, Dimitris
Hatt, Mathieu
Cheze Le Rest, Catherine
author_facet Sepehri, Shima
Tankyevych, Olena
Iantsen, Andrei
Visvikis, Dimitris
Hatt, Mathieu
Cheze Le Rest, Catherine
author_sort Sepehri, Shima
collection PubMed
description BACKGROUND: The aim of this work was to investigate the ability of building prognostic models in non-small cell lung cancer (NSCLC) using radiomic features from positron emission tomography and computed tomography with 2-deoxy-2-[fluorine-18]fluoro-d-glucose ((18)F-FDG PET/CT) images based on a “rough” volume of interest (VOI) containing the tumor instead of its accurate delineation, which is a significant time-consuming bottleneck of radiomics analyses. METHODS: A cohort of 138 patients with stage II–III NSCLC treated with radiochemotherapy recruited retrospectively (n = 87) and prospectively (n = 51) was used. Two approaches were compared: firstly, the radiomic features were extracted from the delineated primary tumor volumes in both PET (using the automated fuzzy locally adaptive Bayesian, FLAB) and CT (using a semi-automated approach with 3D Slicer™) components. Both delineations were carried out within previously manually defined “rough” VOIs containing the tumor and the surrounding tissues, which were exploited for the second approach: the same features were extracted from this alternative VOI. Both sets for features were then combined with the clinical variables and processed through the same machine learning (ML) pipelines using the retrospectively recruited patients as the training set and the prospectively recruited patients as the testing set. Logistic regression (LR), random forest (RF), and support vector machine (SVM), as well as their consensus through averaging the output probabilities, were considered for feature selection and modeling for overall survival (OS) prediction as a binary classification (either median OS or 6 months OS). The resulting models were compared in terms of balanced accuracy, sensitivity, and specificity. RESULTS: Overall, better performance was achieved using the features from delineated tumor volumes. This was observed consistently across ML algorithms and for the two clinical endpoints. However, the loss of performance was not significant, especially when a consensus of the three ML algorithms was considered (0.89 vs. 0.88 and 0.78 vs. 0.77). CONCLUSION: Our findings suggest that it is feasible to achieve similar levels of prognostic accuracy in radiomics-based modeling by relying on a faster and easier VOI definition, skipping a time-consuming tumor delineation step, thus facilitating automation of the whole radiomics workflow. The associated cost is a loss of performance in the resulting models, although this loss can be greatly mitigated when a consensus of several models is relied upon.
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spelling pubmed-85600212021-11-02 Accurate Tumor Delineation vs. Rough Volume of Interest Analysis for (18)F-FDG PET/CT Radiomics-Based Prognostic Modeling inNon-Small Cell Lung Cancer Sepehri, Shima Tankyevych, Olena Iantsen, Andrei Visvikis, Dimitris Hatt, Mathieu Cheze Le Rest, Catherine Front Oncol Oncology BACKGROUND: The aim of this work was to investigate the ability of building prognostic models in non-small cell lung cancer (NSCLC) using radiomic features from positron emission tomography and computed tomography with 2-deoxy-2-[fluorine-18]fluoro-d-glucose ((18)F-FDG PET/CT) images based on a “rough” volume of interest (VOI) containing the tumor instead of its accurate delineation, which is a significant time-consuming bottleneck of radiomics analyses. METHODS: A cohort of 138 patients with stage II–III NSCLC treated with radiochemotherapy recruited retrospectively (n = 87) and prospectively (n = 51) was used. Two approaches were compared: firstly, the radiomic features were extracted from the delineated primary tumor volumes in both PET (using the automated fuzzy locally adaptive Bayesian, FLAB) and CT (using a semi-automated approach with 3D Slicer™) components. Both delineations were carried out within previously manually defined “rough” VOIs containing the tumor and the surrounding tissues, which were exploited for the second approach: the same features were extracted from this alternative VOI. Both sets for features were then combined with the clinical variables and processed through the same machine learning (ML) pipelines using the retrospectively recruited patients as the training set and the prospectively recruited patients as the testing set. Logistic regression (LR), random forest (RF), and support vector machine (SVM), as well as their consensus through averaging the output probabilities, were considered for feature selection and modeling for overall survival (OS) prediction as a binary classification (either median OS or 6 months OS). The resulting models were compared in terms of balanced accuracy, sensitivity, and specificity. RESULTS: Overall, better performance was achieved using the features from delineated tumor volumes. This was observed consistently across ML algorithms and for the two clinical endpoints. However, the loss of performance was not significant, especially when a consensus of the three ML algorithms was considered (0.89 vs. 0.88 and 0.78 vs. 0.77). CONCLUSION: Our findings suggest that it is feasible to achieve similar levels of prognostic accuracy in radiomics-based modeling by relying on a faster and easier VOI definition, skipping a time-consuming tumor delineation step, thus facilitating automation of the whole radiomics workflow. The associated cost is a loss of performance in the resulting models, although this loss can be greatly mitigated when a consensus of several models is relied upon. Frontiers Media S.A. 2021-10-18 /pmc/articles/PMC8560021/ /pubmed/34733779 http://dx.doi.org/10.3389/fonc.2021.726865 Text en Copyright © 2021 Sepehri, Tankyevych, Iantsen, Visvikis, Hatt and Cheze Le Rest https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Sepehri, Shima
Tankyevych, Olena
Iantsen, Andrei
Visvikis, Dimitris
Hatt, Mathieu
Cheze Le Rest, Catherine
Accurate Tumor Delineation vs. Rough Volume of Interest Analysis for (18)F-FDG PET/CT Radiomics-Based Prognostic Modeling inNon-Small Cell Lung Cancer
title Accurate Tumor Delineation vs. Rough Volume of Interest Analysis for (18)F-FDG PET/CT Radiomics-Based Prognostic Modeling inNon-Small Cell Lung Cancer
title_full Accurate Tumor Delineation vs. Rough Volume of Interest Analysis for (18)F-FDG PET/CT Radiomics-Based Prognostic Modeling inNon-Small Cell Lung Cancer
title_fullStr Accurate Tumor Delineation vs. Rough Volume of Interest Analysis for (18)F-FDG PET/CT Radiomics-Based Prognostic Modeling inNon-Small Cell Lung Cancer
title_full_unstemmed Accurate Tumor Delineation vs. Rough Volume of Interest Analysis for (18)F-FDG PET/CT Radiomics-Based Prognostic Modeling inNon-Small Cell Lung Cancer
title_short Accurate Tumor Delineation vs. Rough Volume of Interest Analysis for (18)F-FDG PET/CT Radiomics-Based Prognostic Modeling inNon-Small Cell Lung Cancer
title_sort accurate tumor delineation vs. rough volume of interest analysis for (18)f-fdg pet/ct radiomics-based prognostic modeling innon-small cell lung cancer
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8560021/
https://www.ncbi.nlm.nih.gov/pubmed/34733779
http://dx.doi.org/10.3389/fonc.2021.726865
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