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Impact of GAN-based lesion-focused medical image super-resolution on the robustness of radiomic features

Robust machine learning models based on radiomic features might allow for accurate diagnosis, prognosis, and medical decision-making. Unfortunately, the lack of standardized radiomic feature extraction has hampered their clinical use. Since the radiomic features tend to be affected by low voxel stat...

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Autores principales: de Farias, Erick Costa, di Noia, Christian, Han, Changhee, Sala, Evis, Castelli, Mauro, Rundo, Leonardo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8560955/
https://www.ncbi.nlm.nih.gov/pubmed/34725417
http://dx.doi.org/10.1038/s41598-021-00898-z
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author de Farias, Erick Costa
di Noia, Christian
Han, Changhee
Sala, Evis
Castelli, Mauro
Rundo, Leonardo
author_facet de Farias, Erick Costa
di Noia, Christian
Han, Changhee
Sala, Evis
Castelli, Mauro
Rundo, Leonardo
author_sort de Farias, Erick Costa
collection PubMed
description Robust machine learning models based on radiomic features might allow for accurate diagnosis, prognosis, and medical decision-making. Unfortunately, the lack of standardized radiomic feature extraction has hampered their clinical use. Since the radiomic features tend to be affected by low voxel statistics in regions of interest, increasing the sample size would improve their robustness in clinical studies. Therefore, we propose a Generative Adversarial Network (GAN)-based lesion-focused framework for Computed Tomography (CT) image Super-Resolution (SR); for the lesion (i.e., cancer) patch-focused training, we incorporate Spatial Pyramid Pooling (SPP) into GAN-Constrained by the Identical, Residual, and Cycle Learning Ensemble (GAN-CIRCLE). At [Formula: see text] SR, the proposed model achieved better perceptual quality with less blurring than the other considered state-of-the-art SR methods, while producing comparable results at [Formula: see text] SR. We also evaluated the robustness of our model’s radiomic feature in terms of quantization on a different lung cancer CT dataset using Principal Component Analysis (PCA). Intriguingly, the most important radiomic features in our PCA-based analysis were the most robust features extracted on the GAN-super-resolved images. These achievements pave the way for the application of GAN-based image Super-Resolution techniques for studies of radiomics for robust biomarker discovery.
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spelling pubmed-85609552021-11-03 Impact of GAN-based lesion-focused medical image super-resolution on the robustness of radiomic features de Farias, Erick Costa di Noia, Christian Han, Changhee Sala, Evis Castelli, Mauro Rundo, Leonardo Sci Rep Article Robust machine learning models based on radiomic features might allow for accurate diagnosis, prognosis, and medical decision-making. Unfortunately, the lack of standardized radiomic feature extraction has hampered their clinical use. Since the radiomic features tend to be affected by low voxel statistics in regions of interest, increasing the sample size would improve their robustness in clinical studies. Therefore, we propose a Generative Adversarial Network (GAN)-based lesion-focused framework for Computed Tomography (CT) image Super-Resolution (SR); for the lesion (i.e., cancer) patch-focused training, we incorporate Spatial Pyramid Pooling (SPP) into GAN-Constrained by the Identical, Residual, and Cycle Learning Ensemble (GAN-CIRCLE). At [Formula: see text] SR, the proposed model achieved better perceptual quality with less blurring than the other considered state-of-the-art SR methods, while producing comparable results at [Formula: see text] SR. We also evaluated the robustness of our model’s radiomic feature in terms of quantization on a different lung cancer CT dataset using Principal Component Analysis (PCA). Intriguingly, the most important radiomic features in our PCA-based analysis were the most robust features extracted on the GAN-super-resolved images. These achievements pave the way for the application of GAN-based image Super-Resolution techniques for studies of radiomics for robust biomarker discovery. Nature Publishing Group UK 2021-11-01 /pmc/articles/PMC8560955/ /pubmed/34725417 http://dx.doi.org/10.1038/s41598-021-00898-z Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
de Farias, Erick Costa
di Noia, Christian
Han, Changhee
Sala, Evis
Castelli, Mauro
Rundo, Leonardo
Impact of GAN-based lesion-focused medical image super-resolution on the robustness of radiomic features
title Impact of GAN-based lesion-focused medical image super-resolution on the robustness of radiomic features
title_full Impact of GAN-based lesion-focused medical image super-resolution on the robustness of radiomic features
title_fullStr Impact of GAN-based lesion-focused medical image super-resolution on the robustness of radiomic features
title_full_unstemmed Impact of GAN-based lesion-focused medical image super-resolution on the robustness of radiomic features
title_short Impact of GAN-based lesion-focused medical image super-resolution on the robustness of radiomic features
title_sort impact of gan-based lesion-focused medical image super-resolution on the robustness of radiomic features
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8560955/
https://www.ncbi.nlm.nih.gov/pubmed/34725417
http://dx.doi.org/10.1038/s41598-021-00898-z
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