Cargando…

The Prognostic Value of a Tumor Microenvironment-Based Immune Cell Infiltration Score Model in Colon Cancer

The current study aimed to construct a prognostic predictive model based on tumor microenvironment. CIBERSORT and ESTIMATE algorithms were used to reveal the immune cell infiltration (ICI) landscape of colon cancer. Patients were classified into three clusters by ConsensusClusterPlus algorithm. ICI...

Descripción completa

Detalles Bibliográficos
Autores principales: Tang, Xingkui, Liu, Minling, Luo, Xijun, Zhu, Mengyuan, Huang, Shan, Pan, Xiaofen
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8561118/
https://www.ncbi.nlm.nih.gov/pubmed/34737949
http://dx.doi.org/10.3389/fonc.2021.728842
_version_ 1784593062681378816
author Tang, Xingkui
Liu, Minling
Luo, Xijun
Zhu, Mengyuan
Huang, Shan
Pan, Xiaofen
author_facet Tang, Xingkui
Liu, Minling
Luo, Xijun
Zhu, Mengyuan
Huang, Shan
Pan, Xiaofen
author_sort Tang, Xingkui
collection PubMed
description The current study aimed to construct a prognostic predictive model based on tumor microenvironment. CIBERSORT and ESTIMATE algorithms were used to reveal the immune cell infiltration (ICI) landscape of colon cancer. Patients were classified into three clusters by ConsensusClusterPlus algorithm. ICI scores of each patient were determined by principal component analysis. Patients were divided into high and low ICI score groups. Survival, gene expression, and somatic mutation of the two groups were compared. We found that patients with no lymph node invasion, no metastasis, T1–2 disease, and stage I–II had higher ICI scores. Calcium signaling pathway, leukocyte transendothelial migration pathway, MAPK signaling pathway, TGF β pathway, and Wnt signaling pathway were enriched in the high ICI score group. Immune-checkpoint and immune-activity associated genes were decreased in high ICI score patients. Patients in the high ICI score group had better survival. Prognostic value of ICI score was independent of tumor mutational burden (TMB). The ICI score model constructed in the current study may serve as an independent prognostic biomarker in colon cancer.
format Online
Article
Text
id pubmed-8561118
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-85611182021-11-03 The Prognostic Value of a Tumor Microenvironment-Based Immune Cell Infiltration Score Model in Colon Cancer Tang, Xingkui Liu, Minling Luo, Xijun Zhu, Mengyuan Huang, Shan Pan, Xiaofen Front Oncol Oncology The current study aimed to construct a prognostic predictive model based on tumor microenvironment. CIBERSORT and ESTIMATE algorithms were used to reveal the immune cell infiltration (ICI) landscape of colon cancer. Patients were classified into three clusters by ConsensusClusterPlus algorithm. ICI scores of each patient were determined by principal component analysis. Patients were divided into high and low ICI score groups. Survival, gene expression, and somatic mutation of the two groups were compared. We found that patients with no lymph node invasion, no metastasis, T1–2 disease, and stage I–II had higher ICI scores. Calcium signaling pathway, leukocyte transendothelial migration pathway, MAPK signaling pathway, TGF β pathway, and Wnt signaling pathway were enriched in the high ICI score group. Immune-checkpoint and immune-activity associated genes were decreased in high ICI score patients. Patients in the high ICI score group had better survival. Prognostic value of ICI score was independent of tumor mutational burden (TMB). The ICI score model constructed in the current study may serve as an independent prognostic biomarker in colon cancer. Frontiers Media S.A. 2021-09-27 /pmc/articles/PMC8561118/ /pubmed/34737949 http://dx.doi.org/10.3389/fonc.2021.728842 Text en Copyright © 2021 Tang, Liu, Luo, Zhu, Huang and Pan https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Oncology
Tang, Xingkui
Liu, Minling
Luo, Xijun
Zhu, Mengyuan
Huang, Shan
Pan, Xiaofen
The Prognostic Value of a Tumor Microenvironment-Based Immune Cell Infiltration Score Model in Colon Cancer
title The Prognostic Value of a Tumor Microenvironment-Based Immune Cell Infiltration Score Model in Colon Cancer
title_full The Prognostic Value of a Tumor Microenvironment-Based Immune Cell Infiltration Score Model in Colon Cancer
title_fullStr The Prognostic Value of a Tumor Microenvironment-Based Immune Cell Infiltration Score Model in Colon Cancer
title_full_unstemmed The Prognostic Value of a Tumor Microenvironment-Based Immune Cell Infiltration Score Model in Colon Cancer
title_short The Prognostic Value of a Tumor Microenvironment-Based Immune Cell Infiltration Score Model in Colon Cancer
title_sort prognostic value of a tumor microenvironment-based immune cell infiltration score model in colon cancer
topic Oncology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8561118/
https://www.ncbi.nlm.nih.gov/pubmed/34737949
http://dx.doi.org/10.3389/fonc.2021.728842
work_keys_str_mv AT tangxingkui theprognosticvalueofatumormicroenvironmentbasedimmunecellinfiltrationscoremodelincoloncancer
AT liuminling theprognosticvalueofatumormicroenvironmentbasedimmunecellinfiltrationscoremodelincoloncancer
AT luoxijun theprognosticvalueofatumormicroenvironmentbasedimmunecellinfiltrationscoremodelincoloncancer
AT zhumengyuan theprognosticvalueofatumormicroenvironmentbasedimmunecellinfiltrationscoremodelincoloncancer
AT huangshan theprognosticvalueofatumormicroenvironmentbasedimmunecellinfiltrationscoremodelincoloncancer
AT panxiaofen theprognosticvalueofatumormicroenvironmentbasedimmunecellinfiltrationscoremodelincoloncancer
AT tangxingkui prognosticvalueofatumormicroenvironmentbasedimmunecellinfiltrationscoremodelincoloncancer
AT liuminling prognosticvalueofatumormicroenvironmentbasedimmunecellinfiltrationscoremodelincoloncancer
AT luoxijun prognosticvalueofatumormicroenvironmentbasedimmunecellinfiltrationscoremodelincoloncancer
AT zhumengyuan prognosticvalueofatumormicroenvironmentbasedimmunecellinfiltrationscoremodelincoloncancer
AT huangshan prognosticvalueofatumormicroenvironmentbasedimmunecellinfiltrationscoremodelincoloncancer
AT panxiaofen prognosticvalueofatumormicroenvironmentbasedimmunecellinfiltrationscoremodelincoloncancer