Cargando…

Genomic resources of broomcorn millet: demonstration and application of a high-throughput BAC mapping pipeline

BACKGROUND: With high-efficient water-use and drought tolerance, broomcorn millet has emerged as a candidate for food security. To promote its research process for molecular breeding and functional research, a comprehensive genome resource is of great importance. RESULTS: Herein, we constructed a BA...

Descripción completa

Detalles Bibliográficos
Autores principales:	Xu, Wei, Liang, Mengjie, Yang, Xue, Wang, Hao, Luo, Meizhong
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2021
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8561967/ https://www.ncbi.nlm.nih.gov/pubmed/34724898 http://dx.doi.org/10.1186/s12863-021-01003-z

Ejemplares similares

The genome of broomcorn millet
por: Zou, Changsong, et al.
Publicado: (2019)

The Alkali Tolerance of Broomcorn Millet (Panicum miliaceum L.) at the Germination and Seedling Stage: The Case of 296 Broomcorn Millet Genotypes
por: Ma, Qian, et al.
Publicado: (2021)

Chromosome conformation capture resolved near complete genome assembly of broomcorn millet
por: Shi, Junpeng, et al.
Publicado: (2019)

Identification and function analysis of yellow-leaf mutant (YX-yl) of broomcorn millet
por: Wang, Yushen, et al.
Publicado: (2022)

Genetic diversity and phylogeography of broomcorn millet (Panicum miliaceum L.) across Eurasia
por: Hunt, Harriet V, et al.
Publicado: (2011)

Reticulate evolution in Panicum (Poaceae): the origin of tetraploid broomcorn millet, P. miliaceum
por: Hunt, Harriet V., et al.
Publicado: (2014)

Genetic evidence for a western Chinese origin of broomcorn millet (Panicum miliaceum)
por: Hunt, Harriet V, et al.
Publicado: (2018)

Broomcorn and foxtail millet were cultivated in Taiwan about 5000 years ago
por: Tsang, Chen-Hwa, et al.
Publicado: (2017)

Microbiota Composition during Fermentation of Broomcorn Millet Huangjiu and Their Effects on Flavor Quality
por: Wang, Ke, et al.
Publicado: (2023)

Shift in subsistence crop dominance from broomcorn millet to foxtail millet around 5500 BP in the western Loess Plateau
por: Yang, Yishi, et al.
Publicado: (2022)

Dynamic and Comparative Transcriptome Analyses Reveal Key Factors Contributing to Cadmium Tolerance in Broomcorn Millet
por: Liu, Jiajia, et al.
Publicado: (2022)

Molecular Basis of the Waxy Endosperm Starch Phenotype in Broomcorn Millet (Panicum miliaceum L.)
por: Hunt, Harriet V., et al.
Publicado: (2010)

Leaf Transcriptome Analysis of Broomcorn Millet Uncovers Key Genes and Pathways in Response to Sporisorium destruens
por: Jin, Fei, et al.
Publicado: (2021)

Identification and fine-mapping of a major QTL (PH1.1) conferring plant height in broomcorn millet (Panicum miliaceum)
por: Liu, Tianpeng, et al.
Publicado: (2022)

A pair of new BAC and BIBAC vectors that facilitate BAC/BIBAC library construction and intact large genomic DNA insert exchange
por: Shi, Xue, et al.
Publicado: (2011)

Biochar and Nitrogen Fertilizer Change the Quality of Waxy and Non-Waxy Broomcorn Millet (Panicum miliaceum L.) Starch
por: Zhang, Miaomiao, et al.
Publicado: (2023)

Waxy Phenotype Evolution in the Allotetraploid Cereal Broomcorn Millet: Mutations at the GBSSI Locus in Their Functional and Phylogenetic Context
por: Hunt, Harriet V., et al.
Publicado: (2013)

The potential of stable carbon and nitrogen isotope analysis of foxtail and broomcorn millets for investigating ancient farming systems
por: Dong, Yu, et al.
Publicado: (2022)

A BAC based physical map and genome survey of the rice false smut fungus Villosiclava virens
por: Wang, Xiaoming, et al.
Publicado: (2013)

Transcriptome-wide identification and expression profiles of the WRKY transcription factor family in Broomcorn millet (Panicum miliaceum L.)
por: Yue, Hong, et al.
Publicado: (2016)

Phytolith analysis for differentiating between broomcorn millet (Panicum miliaceum) and its weed/feral type (Panicum ruderale)
por: Zhang, Jianping, et al.
Publicado: (2018)

De novo Assembly and Characterization of the Transcriptome of Broomcorn Millet (Panicum miliaceum L.) for Gene Discovery and Marker Development
por: Yue, Hong, et al.
Publicado: (2016)

Genetic Diversity and Population Structure of Broomcorn Millet (Panicum miliaceum L.) Cultivars and Landraces in China Based on Microsatellite Markers
por: Liu, Minxuan, et al.
Publicado: (2016)

Effect of Different Processing Methods on the Accumulation of the Phenolic Compounds and Antioxidant Profile of Broomcorn Millet (Panicum miliaceum L.) Flour
por: Kalam Azad, Md Obyedul, et al.
Publicado: (2019)

New AMS (14)C dates track the arrival and spread of broomcorn millet cultivation and agricultural change in prehistoric Europe
por: Filipović, Dragana, et al.
Publicado: (2020)

Genome-wide analysis of the NAC transcription factor family in broomcorn millet (Panicum miliaceum L.) and expression analysis under drought stress
por: Shan, Zhongying, et al.
Publicado: (2020)

A high-quality, phased genome assembly of broomcorn millet reveals the features of its subgenome evolution and 3D chromatin organization
por: Wang, Zhiheng, et al.
Publicado: (2023)

pBACode: a random-barcode-based high-throughput approach for BAC paired-end sequencing and physical clone mapping
por: Wei, Xiaolin, et al.
Publicado: (2017)

Plant Stage, Not Drought Stress, Determines the Effect of Cultivars on Bacterial Community Diversity in the Rhizosphere of Broomcorn Millet (Panicum miliaceum L.)
por: Na, Xiaofan, et al.
Publicado: (2019)

The Identification of Broomcorn Millet bZIP Transcription Factors, Which Regulate Growth and Development to Enhance Stress Tolerance and Seed Germination
por: An, Peipei, et al.
Publicado: (2022)

An optimistic future of C(4) crop broomcorn millet (Panicum miliaceum L.) for food security under increasing atmospheric CO(2) concentrations
por: Shi, Xinrui, et al.
Publicado: (2022)

Whole Genome Mapping with Feature Sets from High-Throughput Sequencing Data
por: Pan, Yonglong, et al.
Publicado: (2016)

A high‐throughput BAC end analysis protocol (BAC‐anchor) for profiling genome assembly and physical mapping
por: Yang, Xiaohui, et al.
Publicado: (2019)

Functional Characteristics of Lactic Acid Bacteria In Vitro Isolated from Spontaneously Fermented Sour Porridge with Broomcorn Millet in Northwestern Shanxi Province of China
por: Wang, Qi, et al.
Publicado: (2022)

Genetic Divergence and Population Structure in Weedy and Cultivated Broomcorn Millets (Panicum miliaceum L.) Revealed by Specific-Locus Amplified Fragment Sequencing (SLAF-Seq)
por: Li, Chunxiang, et al.
Publicado: (2021)

High-throughput physical map anchoring via BAC-pool sequencing
por: Cviková, Kateřina, et al.
Publicado: (2015)

Construction of a BAC library and mapping BAC clones to the linkage map of Barramundi, Lates calcarifer
por: Wang, Chun Ming, et al.
Publicado: (2008)

BAC library resources for map-based cloning and physical map construction in barley (Hordeum vulgare L.)
por: Schulte, Daniela, et al.
Publicado: (2011)

BacSeq: A User-Friendly Automated Pipeline for Whole-Genome Sequence Analysis of Bacterial Genomes
por: Chukamnerd, Arnon, et al.
Publicado: (2023)

Comparison of calling pipelines for whole genome sequencing: an empirical study demonstrating the importance of mapping and alignment
por: Betschart, Raphael O., et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_guavr84m1kutj4t3mqbk40sqrh