Cargando…
Locating hydrogen positions in the autunite mineral metatorbernite [Cu(UO(2))(2)(PO(4))(2)·8H(2)O]: a combined approach using neutron powder diffraction and computational modelling
Metatorbernite [Cu(UO(2))(2)(PO(4))(2)·8H(2)O] is a promising remediation material for environmental uranium contamination. Previous X-ray diffraction studies have been unable to definitively locate hydrogen positions within metatorbernite, which are key to determining the hydrogen-bond network that...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8562655/ https://www.ncbi.nlm.nih.gov/pubmed/34804548 http://dx.doi.org/10.1107/S205225252100837X |
_version_ | 1784593296319840256 |
---|---|
author | MacIver-Jones, Fiona M. Sutcliffe, Polly Graham, Margaret C. Morrison, Carole A. Kirk, Caroline A. |
author_facet | MacIver-Jones, Fiona M. Sutcliffe, Polly Graham, Margaret C. Morrison, Carole A. Kirk, Caroline A. |
author_sort | MacIver-Jones, Fiona M. |
collection | PubMed |
description | Metatorbernite [Cu(UO(2))(2)(PO(4))(2)·8H(2)O] is a promising remediation material for environmental uranium contamination. Previous X-ray diffraction studies have been unable to definitively locate hydrogen positions within metatorbernite, which are key to determining the hydrogen-bond network that helps to stabilize the structure. Here, hydrogen positions have been determined using a combination of neutron powder diffraction and the computational modelling technique ab initio random structure searching (AIRSS). Atomic coordinates determined through Rietveld analysis of neutron powder diffraction data are in excellent agreement with the minimum energy configuration predicted by AIRSS; thus, simulations confirm that our proposed model likely represents the global minimum configuration. Two groups of water molecules exist within the metatorbernite structure: free water and copper-coordinating water. Free water molecules are held within the structure by hydrogen bonding only, whilst the coordinating water molecules bond to copper in the equatorial positions to produce a 4 + 2 Jahn–Teller octahedra. The successful agreement between neutron powder diffraction data and AIRSS suggests that this combined approach has excellent potential for the study of other (trans)uranium materials in which hydrogen bonding plays a key role in phase stability. |
format | Online Article Text |
id | pubmed-8562655 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-85626552021-11-18 Locating hydrogen positions in the autunite mineral metatorbernite [Cu(UO(2))(2)(PO(4))(2)·8H(2)O]: a combined approach using neutron powder diffraction and computational modelling MacIver-Jones, Fiona M. Sutcliffe, Polly Graham, Margaret C. Morrison, Carole A. Kirk, Caroline A. IUCrJ Research Papers Metatorbernite [Cu(UO(2))(2)(PO(4))(2)·8H(2)O] is a promising remediation material for environmental uranium contamination. Previous X-ray diffraction studies have been unable to definitively locate hydrogen positions within metatorbernite, which are key to determining the hydrogen-bond network that helps to stabilize the structure. Here, hydrogen positions have been determined using a combination of neutron powder diffraction and the computational modelling technique ab initio random structure searching (AIRSS). Atomic coordinates determined through Rietveld analysis of neutron powder diffraction data are in excellent agreement with the minimum energy configuration predicted by AIRSS; thus, simulations confirm that our proposed model likely represents the global minimum configuration. Two groups of water molecules exist within the metatorbernite structure: free water and copper-coordinating water. Free water molecules are held within the structure by hydrogen bonding only, whilst the coordinating water molecules bond to copper in the equatorial positions to produce a 4 + 2 Jahn–Teller octahedra. The successful agreement between neutron powder diffraction data and AIRSS suggests that this combined approach has excellent potential for the study of other (trans)uranium materials in which hydrogen bonding plays a key role in phase stability. International Union of Crystallography 2021-10-02 /pmc/articles/PMC8562655/ /pubmed/34804548 http://dx.doi.org/10.1107/S205225252100837X Text en © Fiona M. MacIver-Jones et al. 2021 https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers MacIver-Jones, Fiona M. Sutcliffe, Polly Graham, Margaret C. Morrison, Carole A. Kirk, Caroline A. Locating hydrogen positions in the autunite mineral metatorbernite [Cu(UO(2))(2)(PO(4))(2)·8H(2)O]: a combined approach using neutron powder diffraction and computational modelling |
title | Locating hydrogen positions in the autunite mineral metatorbernite [Cu(UO(2))(2)(PO(4))(2)·8H(2)O]: a combined approach using neutron powder diffraction and computational modelling |
title_full | Locating hydrogen positions in the autunite mineral metatorbernite [Cu(UO(2))(2)(PO(4))(2)·8H(2)O]: a combined approach using neutron powder diffraction and computational modelling |
title_fullStr | Locating hydrogen positions in the autunite mineral metatorbernite [Cu(UO(2))(2)(PO(4))(2)·8H(2)O]: a combined approach using neutron powder diffraction and computational modelling |
title_full_unstemmed | Locating hydrogen positions in the autunite mineral metatorbernite [Cu(UO(2))(2)(PO(4))(2)·8H(2)O]: a combined approach using neutron powder diffraction and computational modelling |
title_short | Locating hydrogen positions in the autunite mineral metatorbernite [Cu(UO(2))(2)(PO(4))(2)·8H(2)O]: a combined approach using neutron powder diffraction and computational modelling |
title_sort | locating hydrogen positions in the autunite mineral metatorbernite [cu(uo(2))(2)(po(4))(2)·8h(2)o]: a combined approach using neutron powder diffraction and computational modelling |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8562655/ https://www.ncbi.nlm.nih.gov/pubmed/34804548 http://dx.doi.org/10.1107/S205225252100837X |
work_keys_str_mv | AT maciverjonesfionam locatinghydrogenpositionsintheautunitemineralmetatorbernitecuuo22po428h2oacombinedapproachusingneutronpowderdiffractionandcomputationalmodelling AT sutcliffepolly locatinghydrogenpositionsintheautunitemineralmetatorbernitecuuo22po428h2oacombinedapproachusingneutronpowderdiffractionandcomputationalmodelling AT grahammargaretc locatinghydrogenpositionsintheautunitemineralmetatorbernitecuuo22po428h2oacombinedapproachusingneutronpowderdiffractionandcomputationalmodelling AT morrisoncarolea locatinghydrogenpositionsintheautunitemineralmetatorbernitecuuo22po428h2oacombinedapproachusingneutronpowderdiffractionandcomputationalmodelling AT kirkcarolinea locatinghydrogenpositionsintheautunitemineralmetatorbernitecuuo22po428h2oacombinedapproachusingneutronpowderdiffractionandcomputationalmodelling |