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Modelling Oscillatory Patterns in the Bovine Estrous Cycle with Boolean Delay Equations
Boolean delay equations (BDEs), with their relatively simple and intuitive mode of modelling, have been used in many research areas including, for example, climate dynamics and earthquake propagation. Their application to biological systems has been scarce and limited to the molecular level. Here, w...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer US
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8563642/ https://www.ncbi.nlm.nih.gov/pubmed/34727249 http://dx.doi.org/10.1007/s11538-021-00942-z |
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author | Berg, Mascha Plöntzke, Julia Siebert, Heike Röblitz, Susanna |
author_facet | Berg, Mascha Plöntzke, Julia Siebert, Heike Röblitz, Susanna |
author_sort | Berg, Mascha |
collection | PubMed |
description | Boolean delay equations (BDEs), with their relatively simple and intuitive mode of modelling, have been used in many research areas including, for example, climate dynamics and earthquake propagation. Their application to biological systems has been scarce and limited to the molecular level. Here, we derive and present two BDE models. One is directly derived from a previously published ordinary differential equation (ODE) model for the bovine estrous cycle, whereas the second model includes a modification of a particular biological mechanism. We not only compare the simulation results from the BDE models with the trajectories of the ODE model, but also validate the BDE models with two additional numerical experiments. One experiment induces a switch in the oscillatory pattern upon changes in the model parameters, and the other simulates the administration of a hormone that is known to shift the estrous cycle in time. The models presented here are the first BDE models for hormonal oscillators, and the first BDE models for drug administration. Even though automatic parameter estimation still remains challenging, our results support the role of BDEs as a framework for the systematic modelling of complex biological oscillators. SUPPLEMENTARY INFORMATION: The online version supplementary material available at 10.1007/s11538-021-00942-z. |
format | Online Article Text |
id | pubmed-8563642 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Springer US |
record_format | MEDLINE/PubMed |
spelling | pubmed-85636422021-11-04 Modelling Oscillatory Patterns in the Bovine Estrous Cycle with Boolean Delay Equations Berg, Mascha Plöntzke, Julia Siebert, Heike Röblitz, Susanna Bull Math Biol Original Article Boolean delay equations (BDEs), with their relatively simple and intuitive mode of modelling, have been used in many research areas including, for example, climate dynamics and earthquake propagation. Their application to biological systems has been scarce and limited to the molecular level. Here, we derive and present two BDE models. One is directly derived from a previously published ordinary differential equation (ODE) model for the bovine estrous cycle, whereas the second model includes a modification of a particular biological mechanism. We not only compare the simulation results from the BDE models with the trajectories of the ODE model, but also validate the BDE models with two additional numerical experiments. One experiment induces a switch in the oscillatory pattern upon changes in the model parameters, and the other simulates the administration of a hormone that is known to shift the estrous cycle in time. The models presented here are the first BDE models for hormonal oscillators, and the first BDE models for drug administration. Even though automatic parameter estimation still remains challenging, our results support the role of BDEs as a framework for the systematic modelling of complex biological oscillators. SUPPLEMENTARY INFORMATION: The online version supplementary material available at 10.1007/s11538-021-00942-z. Springer US 2021-11-02 2021 /pmc/articles/PMC8563642/ /pubmed/34727249 http://dx.doi.org/10.1007/s11538-021-00942-z Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Original Article Berg, Mascha Plöntzke, Julia Siebert, Heike Röblitz, Susanna Modelling Oscillatory Patterns in the Bovine Estrous Cycle with Boolean Delay Equations |
title | Modelling Oscillatory Patterns in the Bovine Estrous Cycle with Boolean Delay Equations |
title_full | Modelling Oscillatory Patterns in the Bovine Estrous Cycle with Boolean Delay Equations |
title_fullStr | Modelling Oscillatory Patterns in the Bovine Estrous Cycle with Boolean Delay Equations |
title_full_unstemmed | Modelling Oscillatory Patterns in the Bovine Estrous Cycle with Boolean Delay Equations |
title_short | Modelling Oscillatory Patterns in the Bovine Estrous Cycle with Boolean Delay Equations |
title_sort | modelling oscillatory patterns in the bovine estrous cycle with boolean delay equations |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8563642/ https://www.ncbi.nlm.nih.gov/pubmed/34727249 http://dx.doi.org/10.1007/s11538-021-00942-z |
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