Cargando…

Molecular characterization of metabolic subtypes of gastric cancer based on metabolism-related lncRNA

Increasing evidence has demonstrated that lncRNAs are critical regulators in diverse biological processes, but the function of lncRNA in metabolic regulation remains largely unexplored. In this study, we evaluated the association between lncRNA and metabolic pathways and identified metabolism-relate...

Descripción completa

Detalles Bibliográficos
Autores principales: Li, Lingdi, Ma, Jianfei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8563741/
https://www.ncbi.nlm.nih.gov/pubmed/34728653
http://dx.doi.org/10.1038/s41598-021-00410-7
_version_ 1784593469559275520
author Li, Lingdi
Ma, Jianfei
author_facet Li, Lingdi
Ma, Jianfei
author_sort Li, Lingdi
collection PubMed
description Increasing evidence has demonstrated that lncRNAs are critical regulators in diverse biological processes, but the function of lncRNA in metabolic regulation remains largely unexplored. In this study, we evaluated the association between lncRNA and metabolic pathways and identified metabolism-related lncRNAs. Gastric cancer can be mainly subdivided into 2 clusters based on these metabolism-related lncRNA regulators. Comparative analysis shows that these subtypes are found to be highly consistent with previously identified subtypes based on other omics data. Functional enrichment analysis shows that they are enriched in distinct biological processes. Mutation analysis shows that ABCA13 is a protective factor in subtype C1 but a risk factor in C2. Analysis of chemotherapeutic and immunotherapeutic sensitivity shows that these subtypes tend to display distinct sensitivity to the same chemical drugs. In conclusion, these findings demonstrated the significance of lncRNA in metabolic regulation. These metabolism-related lncRNA regulators can improve our understanding of the underlying mechanism of lncRNAs and advance the research of immunotherapies in the clinical management of gastric cancer.
format Online
Article
Text
id pubmed-8563741
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-85637412021-11-03 Molecular characterization of metabolic subtypes of gastric cancer based on metabolism-related lncRNA Li, Lingdi Ma, Jianfei Sci Rep Article Increasing evidence has demonstrated that lncRNAs are critical regulators in diverse biological processes, but the function of lncRNA in metabolic regulation remains largely unexplored. In this study, we evaluated the association between lncRNA and metabolic pathways and identified metabolism-related lncRNAs. Gastric cancer can be mainly subdivided into 2 clusters based on these metabolism-related lncRNA regulators. Comparative analysis shows that these subtypes are found to be highly consistent with previously identified subtypes based on other omics data. Functional enrichment analysis shows that they are enriched in distinct biological processes. Mutation analysis shows that ABCA13 is a protective factor in subtype C1 but a risk factor in C2. Analysis of chemotherapeutic and immunotherapeutic sensitivity shows that these subtypes tend to display distinct sensitivity to the same chemical drugs. In conclusion, these findings demonstrated the significance of lncRNA in metabolic regulation. These metabolism-related lncRNA regulators can improve our understanding of the underlying mechanism of lncRNAs and advance the research of immunotherapies in the clinical management of gastric cancer. Nature Publishing Group UK 2021-11-02 /pmc/articles/PMC8563741/ /pubmed/34728653 http://dx.doi.org/10.1038/s41598-021-00410-7 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Li, Lingdi
Ma, Jianfei
Molecular characterization of metabolic subtypes of gastric cancer based on metabolism-related lncRNA
title Molecular characterization of metabolic subtypes of gastric cancer based on metabolism-related lncRNA
title_full Molecular characterization of metabolic subtypes of gastric cancer based on metabolism-related lncRNA
title_fullStr Molecular characterization of metabolic subtypes of gastric cancer based on metabolism-related lncRNA
title_full_unstemmed Molecular characterization of metabolic subtypes of gastric cancer based on metabolism-related lncRNA
title_short Molecular characterization of metabolic subtypes of gastric cancer based on metabolism-related lncRNA
title_sort molecular characterization of metabolic subtypes of gastric cancer based on metabolism-related lncrna
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8563741/
https://www.ncbi.nlm.nih.gov/pubmed/34728653
http://dx.doi.org/10.1038/s41598-021-00410-7
work_keys_str_mv AT lilingdi molecularcharacterizationofmetabolicsubtypesofgastriccancerbasedonmetabolismrelatedlncrna
AT majianfei molecularcharacterizationofmetabolicsubtypesofgastriccancerbasedonmetabolismrelatedlncrna