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Shape-changing chains for morphometric analysis of 2D and 3D, open or closed outlines
Morphometrics is a multivariate technique for shape analysis widely employed in biological, medical, and paleoanthropological applications. Commonly used morphometric methods require analyzing a huge amount of variables for problems involving a large number of specimens or complex shapes. Moreover,...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8563779/ https://www.ncbi.nlm.nih.gov/pubmed/34728672 http://dx.doi.org/10.1038/s41598-021-00911-5 |
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author | Li, Bingjue Zhou, Shengmin Murray, Andrew Peter Subsol, Gérard |
author_facet | Li, Bingjue Zhou, Shengmin Murray, Andrew Peter Subsol, Gérard |
author_sort | Li, Bingjue |
collection | PubMed |
description | Morphometrics is a multivariate technique for shape analysis widely employed in biological, medical, and paleoanthropological applications. Commonly used morphometric methods require analyzing a huge amount of variables for problems involving a large number of specimens or complex shapes. Moreover, the analysis results are sometimes difficult to interpret and assess. This paper presents a methodology to synthesize a shape-changing chain for 2D or 3D curve fitting and to employ the chain parameters in stepwise discriminant analysis (DA). The shape-changing chain is comprised of three types of segments, including rigid segments that have fixed length and shape, scalable segments with a fixed shape, and extendible segments with constant curvature and torsion. Three examples are presented, including 2D mandible profiles of fossil hominin, 2D leaf outlines, and 3D suture curves on infant skulls. The results demonstrate that the shape-changing chain has several advantages over common morphometric methods. Specifically, it can be applied to a wide range of 2D or 3D profiles, including open or closed curves, and smooth or serrated curves. Additionally, the segmentation of profiles is a flexible and automatic protocol that can consider both biological and geometric features, the number of variables obtained from the fitting results for statistical analysis is modest, and the chain parameters that characterize the profiles can have physical meaning. |
format | Online Article Text |
id | pubmed-8563779 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-85637792021-11-04 Shape-changing chains for morphometric analysis of 2D and 3D, open or closed outlines Li, Bingjue Zhou, Shengmin Murray, Andrew Peter Subsol, Gérard Sci Rep Article Morphometrics is a multivariate technique for shape analysis widely employed in biological, medical, and paleoanthropological applications. Commonly used morphometric methods require analyzing a huge amount of variables for problems involving a large number of specimens or complex shapes. Moreover, the analysis results are sometimes difficult to interpret and assess. This paper presents a methodology to synthesize a shape-changing chain for 2D or 3D curve fitting and to employ the chain parameters in stepwise discriminant analysis (DA). The shape-changing chain is comprised of three types of segments, including rigid segments that have fixed length and shape, scalable segments with a fixed shape, and extendible segments with constant curvature and torsion. Three examples are presented, including 2D mandible profiles of fossil hominin, 2D leaf outlines, and 3D suture curves on infant skulls. The results demonstrate that the shape-changing chain has several advantages over common morphometric methods. Specifically, it can be applied to a wide range of 2D or 3D profiles, including open or closed curves, and smooth or serrated curves. Additionally, the segmentation of profiles is a flexible and automatic protocol that can consider both biological and geometric features, the number of variables obtained from the fitting results for statistical analysis is modest, and the chain parameters that characterize the profiles can have physical meaning. Nature Publishing Group UK 2021-11-02 /pmc/articles/PMC8563779/ /pubmed/34728672 http://dx.doi.org/10.1038/s41598-021-00911-5 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Li, Bingjue Zhou, Shengmin Murray, Andrew Peter Subsol, Gérard Shape-changing chains for morphometric analysis of 2D and 3D, open or closed outlines |
title | Shape-changing chains for morphometric analysis of 2D and 3D, open or closed outlines |
title_full | Shape-changing chains for morphometric analysis of 2D and 3D, open or closed outlines |
title_fullStr | Shape-changing chains for morphometric analysis of 2D and 3D, open or closed outlines |
title_full_unstemmed | Shape-changing chains for morphometric analysis of 2D and 3D, open or closed outlines |
title_short | Shape-changing chains for morphometric analysis of 2D and 3D, open or closed outlines |
title_sort | shape-changing chains for morphometric analysis of 2d and 3d, open or closed outlines |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8563779/ https://www.ncbi.nlm.nih.gov/pubmed/34728672 http://dx.doi.org/10.1038/s41598-021-00911-5 |
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