Cargando…

Digital morphometrics: Application of MorphoLeaf in shape visualization and species delimitation, using Cucurbitaceae leaves as a model

PREMISE: Plant leaves are one of the most important organs for plant identification due to their variability across different taxonomic groups. While traditional morphometrics has contributed tremendously to reducing the problems accompanying plant identification and morphology‐based species delimit...

Descripción completa

Detalles Bibliográficos
Autores principales: Oso, Oluwatobi A., Jayeola, Adeniyi A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8564096/
https://www.ncbi.nlm.nih.gov/pubmed/34760408
http://dx.doi.org/10.1002/aps3.11448
_version_ 1784593542559039488
author Oso, Oluwatobi A.
Jayeola, Adeniyi A.
author_facet Oso, Oluwatobi A.
Jayeola, Adeniyi A.
author_sort Oso, Oluwatobi A.
collection PubMed
description PREMISE: Plant leaves are one of the most important organs for plant identification due to their variability across different taxonomic groups. While traditional morphometrics has contributed tremendously to reducing the problems accompanying plant identification and morphology‐based species delimitation, image‐analysis digital solutions have made it easy to detect more characters to complement existing leaf data sets. METHODS: Here, we apply MorphoLeaf to generate a morphometric data set from 140 leaf specimens of seven Cucurbitaceae species via landmark extraction, the reparameterization of leaf contours, and data quantification and normalization. A statistical analysis was performed on the resulting data set. RESULTS: A principal component analysis revealed that leaf blade area, blade perimeter, tooth area, tooth perimeter, the measure of the distance from tooth position to the tip, and the measure of the distance from tooth position to the base are important and informative landmarks that contribute to the variation within the species studied. DISCUSSION: MorphoLeaf can be applied to quantitatively track leaf diversity, thereby functionally integrating morphometrics and shape visualization into the digital identification of plants. The success of digital morphometrics in leaf outline analyses presents researchers with opportunities to carry out more accurate image‐based research in areas such as plant development, evolution, and phenotyping.
format Online
Article
Text
id pubmed-8564096
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-85640962021-11-09 Digital morphometrics: Application of MorphoLeaf in shape visualization and species delimitation, using Cucurbitaceae leaves as a model Oso, Oluwatobi A. Jayeola, Adeniyi A. Appl Plant Sci Application Article PREMISE: Plant leaves are one of the most important organs for plant identification due to their variability across different taxonomic groups. While traditional morphometrics has contributed tremendously to reducing the problems accompanying plant identification and morphology‐based species delimitation, image‐analysis digital solutions have made it easy to detect more characters to complement existing leaf data sets. METHODS: Here, we apply MorphoLeaf to generate a morphometric data set from 140 leaf specimens of seven Cucurbitaceae species via landmark extraction, the reparameterization of leaf contours, and data quantification and normalization. A statistical analysis was performed on the resulting data set. RESULTS: A principal component analysis revealed that leaf blade area, blade perimeter, tooth area, tooth perimeter, the measure of the distance from tooth position to the tip, and the measure of the distance from tooth position to the base are important and informative landmarks that contribute to the variation within the species studied. DISCUSSION: MorphoLeaf can be applied to quantitatively track leaf diversity, thereby functionally integrating morphometrics and shape visualization into the digital identification of plants. The success of digital morphometrics in leaf outline analyses presents researchers with opportunities to carry out more accurate image‐based research in areas such as plant development, evolution, and phenotyping. John Wiley and Sons Inc. 2021-10-28 /pmc/articles/PMC8564096/ /pubmed/34760408 http://dx.doi.org/10.1002/aps3.11448 Text en © 2021 The Authors. Applications in Plant Sciences published by Wiley Periodicals LLC on behalf of Botanical Society of America https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Application Article
Oso, Oluwatobi A.
Jayeola, Adeniyi A.
Digital morphometrics: Application of MorphoLeaf in shape visualization and species delimitation, using Cucurbitaceae leaves as a model
title Digital morphometrics: Application of MorphoLeaf in shape visualization and species delimitation, using Cucurbitaceae leaves as a model
title_full Digital morphometrics: Application of MorphoLeaf in shape visualization and species delimitation, using Cucurbitaceae leaves as a model
title_fullStr Digital morphometrics: Application of MorphoLeaf in shape visualization and species delimitation, using Cucurbitaceae leaves as a model
title_full_unstemmed Digital morphometrics: Application of MorphoLeaf in shape visualization and species delimitation, using Cucurbitaceae leaves as a model
title_short Digital morphometrics: Application of MorphoLeaf in shape visualization and species delimitation, using Cucurbitaceae leaves as a model
title_sort digital morphometrics: application of morpholeaf in shape visualization and species delimitation, using cucurbitaceae leaves as a model
topic Application Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8564096/
https://www.ncbi.nlm.nih.gov/pubmed/34760408
http://dx.doi.org/10.1002/aps3.11448
work_keys_str_mv AT osooluwatobia digitalmorphometricsapplicationofmorpholeafinshapevisualizationandspeciesdelimitationusingcucurbitaceaeleavesasamodel
AT jayeolaadeniyia digitalmorphometricsapplicationofmorpholeafinshapevisualizationandspeciesdelimitationusingcucurbitaceaeleavesasamodel