Cargando…
Digital morphometrics: Application of MorphoLeaf in shape visualization and species delimitation, using Cucurbitaceae leaves as a model
PREMISE: Plant leaves are one of the most important organs for plant identification due to their variability across different taxonomic groups. While traditional morphometrics has contributed tremendously to reducing the problems accompanying plant identification and morphology‐based species delimit...
Autores principales: | , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2021
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8564096/ https://www.ncbi.nlm.nih.gov/pubmed/34760408 http://dx.doi.org/10.1002/aps3.11448 |
_version_ | 1784593542559039488 |
---|---|
author | Oso, Oluwatobi A. Jayeola, Adeniyi A. |
author_facet | Oso, Oluwatobi A. Jayeola, Adeniyi A. |
author_sort | Oso, Oluwatobi A. |
collection | PubMed |
description | PREMISE: Plant leaves are one of the most important organs for plant identification due to their variability across different taxonomic groups. While traditional morphometrics has contributed tremendously to reducing the problems accompanying plant identification and morphology‐based species delimitation, image‐analysis digital solutions have made it easy to detect more characters to complement existing leaf data sets. METHODS: Here, we apply MorphoLeaf to generate a morphometric data set from 140 leaf specimens of seven Cucurbitaceae species via landmark extraction, the reparameterization of leaf contours, and data quantification and normalization. A statistical analysis was performed on the resulting data set. RESULTS: A principal component analysis revealed that leaf blade area, blade perimeter, tooth area, tooth perimeter, the measure of the distance from tooth position to the tip, and the measure of the distance from tooth position to the base are important and informative landmarks that contribute to the variation within the species studied. DISCUSSION: MorphoLeaf can be applied to quantitatively track leaf diversity, thereby functionally integrating morphometrics and shape visualization into the digital identification of plants. The success of digital morphometrics in leaf outline analyses presents researchers with opportunities to carry out more accurate image‐based research in areas such as plant development, evolution, and phenotyping. |
format | Online Article Text |
id | pubmed-8564096 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-85640962021-11-09 Digital morphometrics: Application of MorphoLeaf in shape visualization and species delimitation, using Cucurbitaceae leaves as a model Oso, Oluwatobi A. Jayeola, Adeniyi A. Appl Plant Sci Application Article PREMISE: Plant leaves are one of the most important organs for plant identification due to their variability across different taxonomic groups. While traditional morphometrics has contributed tremendously to reducing the problems accompanying plant identification and morphology‐based species delimitation, image‐analysis digital solutions have made it easy to detect more characters to complement existing leaf data sets. METHODS: Here, we apply MorphoLeaf to generate a morphometric data set from 140 leaf specimens of seven Cucurbitaceae species via landmark extraction, the reparameterization of leaf contours, and data quantification and normalization. A statistical analysis was performed on the resulting data set. RESULTS: A principal component analysis revealed that leaf blade area, blade perimeter, tooth area, tooth perimeter, the measure of the distance from tooth position to the tip, and the measure of the distance from tooth position to the base are important and informative landmarks that contribute to the variation within the species studied. DISCUSSION: MorphoLeaf can be applied to quantitatively track leaf diversity, thereby functionally integrating morphometrics and shape visualization into the digital identification of plants. The success of digital morphometrics in leaf outline analyses presents researchers with opportunities to carry out more accurate image‐based research in areas such as plant development, evolution, and phenotyping. John Wiley and Sons Inc. 2021-10-28 /pmc/articles/PMC8564096/ /pubmed/34760408 http://dx.doi.org/10.1002/aps3.11448 Text en © 2021 The Authors. Applications in Plant Sciences published by Wiley Periodicals LLC on behalf of Botanical Society of America https://creativecommons.org/licenses/by-nc/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Application Article Oso, Oluwatobi A. Jayeola, Adeniyi A. Digital morphometrics: Application of MorphoLeaf in shape visualization and species delimitation, using Cucurbitaceae leaves as a model |
title | Digital morphometrics: Application of MorphoLeaf in shape visualization and species delimitation, using Cucurbitaceae leaves as a model |
title_full | Digital morphometrics: Application of MorphoLeaf in shape visualization and species delimitation, using Cucurbitaceae leaves as a model |
title_fullStr | Digital morphometrics: Application of MorphoLeaf in shape visualization and species delimitation, using Cucurbitaceae leaves as a model |
title_full_unstemmed | Digital morphometrics: Application of MorphoLeaf in shape visualization and species delimitation, using Cucurbitaceae leaves as a model |
title_short | Digital morphometrics: Application of MorphoLeaf in shape visualization and species delimitation, using Cucurbitaceae leaves as a model |
title_sort | digital morphometrics: application of morpholeaf in shape visualization and species delimitation, using cucurbitaceae leaves as a model |
topic | Application Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8564096/ https://www.ncbi.nlm.nih.gov/pubmed/34760408 http://dx.doi.org/10.1002/aps3.11448 |
work_keys_str_mv | AT osooluwatobia digitalmorphometricsapplicationofmorpholeafinshapevisualizationandspeciesdelimitationusingcucurbitaceaeleavesasamodel AT jayeolaadeniyia digitalmorphometricsapplicationofmorpholeafinshapevisualizationandspeciesdelimitationusingcucurbitaceaeleavesasamodel |