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A deep learning approach using effective preprocessing techniques to detect COVID-19 from chest CT-scan and X-ray images

Coronavirus disease-19 (COVID-19) is a severe respiratory viral disease first reported in late 2019 that has spread worldwide. Although some wealthy countries have made significant progress in detecting and containing this disease, most underdeveloped countries are still struggling to identify COVID...

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Autores principales: Ahamed, Khabir Uddin, Islam, Manowarul, Uddin, Ashraf, Akhter, Arnisha, Paul, Bikash Kumar, Yousuf, Mohammad Abu, Uddin, Shahadat, Quinn, Julian M.W., Moni, Mohammad Ali
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier Ltd. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8566098/
https://www.ncbi.nlm.nih.gov/pubmed/34781234
http://dx.doi.org/10.1016/j.compbiomed.2021.105014
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author Ahamed, Khabir Uddin
Islam, Manowarul
Uddin, Ashraf
Akhter, Arnisha
Paul, Bikash Kumar
Yousuf, Mohammad Abu
Uddin, Shahadat
Quinn, Julian M.W.
Moni, Mohammad Ali
author_facet Ahamed, Khabir Uddin
Islam, Manowarul
Uddin, Ashraf
Akhter, Arnisha
Paul, Bikash Kumar
Yousuf, Mohammad Abu
Uddin, Shahadat
Quinn, Julian M.W.
Moni, Mohammad Ali
author_sort Ahamed, Khabir Uddin
collection PubMed
description Coronavirus disease-19 (COVID-19) is a severe respiratory viral disease first reported in late 2019 that has spread worldwide. Although some wealthy countries have made significant progress in detecting and containing this disease, most underdeveloped countries are still struggling to identify COVID-19 cases in large populations. With the rising number of COVID-19 cases, there are often insufficient COVID-19 diagnostic kits and related resources in such countries. However, other basic diagnostic resources often do exist, which motivated us to develop Deep Learning models to assist clinicians and radiologists to provide prompt diagnostic support to the patients. In this study, we have developed a deep learning-based COVID-19 case detection model trained with a dataset consisting of chest CT scans and X-ray images. A modified ResNet50V2 architecture was employed as deep learning architecture in the proposed model. The dataset utilized to train the model was collected from various publicly available sources and included four class labels: confirmed COVID-19, normal controls and confirmed viral and bacterial pneumonia cases. The aggregated dataset was preprocessed through a sharpening filter before feeding the dataset into the proposed model. This model attained an accuracy of 96.452% for four-class cases (COVID-19/Normal/Bacterial pneumonia/Viral pneumonia), 97.242% for three-class cases (COVID-19/Normal/Bacterial pneumonia) and 98.954% for two-class cases (COVID-19/Viral pneumonia) using chest X-ray images. The model acquired a comprehensive accuracy of 99.012% for three-class cases (COVID-19/Normal/Community-acquired pneumonia) and 99.99% for two-class cases (Normal/COVID-19) using CT-scan images of the chest. This high accuracy presents a new and potentially important resource to enable radiologists to identify and rapidly diagnose COVID-19 cases with only basic but widely available equipment.
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spelling pubmed-85660982021-11-04 A deep learning approach using effective preprocessing techniques to detect COVID-19 from chest CT-scan and X-ray images Ahamed, Khabir Uddin Islam, Manowarul Uddin, Ashraf Akhter, Arnisha Paul, Bikash Kumar Yousuf, Mohammad Abu Uddin, Shahadat Quinn, Julian M.W. Moni, Mohammad Ali Comput Biol Med Article Coronavirus disease-19 (COVID-19) is a severe respiratory viral disease first reported in late 2019 that has spread worldwide. Although some wealthy countries have made significant progress in detecting and containing this disease, most underdeveloped countries are still struggling to identify COVID-19 cases in large populations. With the rising number of COVID-19 cases, there are often insufficient COVID-19 diagnostic kits and related resources in such countries. However, other basic diagnostic resources often do exist, which motivated us to develop Deep Learning models to assist clinicians and radiologists to provide prompt diagnostic support to the patients. In this study, we have developed a deep learning-based COVID-19 case detection model trained with a dataset consisting of chest CT scans and X-ray images. A modified ResNet50V2 architecture was employed as deep learning architecture in the proposed model. The dataset utilized to train the model was collected from various publicly available sources and included four class labels: confirmed COVID-19, normal controls and confirmed viral and bacterial pneumonia cases. The aggregated dataset was preprocessed through a sharpening filter before feeding the dataset into the proposed model. This model attained an accuracy of 96.452% for four-class cases (COVID-19/Normal/Bacterial pneumonia/Viral pneumonia), 97.242% for three-class cases (COVID-19/Normal/Bacterial pneumonia) and 98.954% for two-class cases (COVID-19/Viral pneumonia) using chest X-ray images. The model acquired a comprehensive accuracy of 99.012% for three-class cases (COVID-19/Normal/Community-acquired pneumonia) and 99.99% for two-class cases (Normal/COVID-19) using CT-scan images of the chest. This high accuracy presents a new and potentially important resource to enable radiologists to identify and rapidly diagnose COVID-19 cases with only basic but widely available equipment. Elsevier Ltd. 2021-12 2021-11-04 /pmc/articles/PMC8566098/ /pubmed/34781234 http://dx.doi.org/10.1016/j.compbiomed.2021.105014 Text en © 2021 Elsevier Ltd. All rights reserved. Since January 2020 Elsevier has created a COVID-19 resource centre with free information in English and Mandarin on the novel coronavirus COVID-19. The COVID-19 resource centre is hosted on Elsevier Connect, the company's public news and information website. Elsevier hereby grants permission to make all its COVID-19-related research that is available on the COVID-19 resource centre - including this research content - immediately available in PubMed Central and other publicly funded repositories, such as the WHO COVID database with rights for unrestricted research re-use and analyses in any form or by any means with acknowledgement of the original source. These permissions are granted for free by Elsevier for as long as the COVID-19 resource centre remains active.
spellingShingle Article
Ahamed, Khabir Uddin
Islam, Manowarul
Uddin, Ashraf
Akhter, Arnisha
Paul, Bikash Kumar
Yousuf, Mohammad Abu
Uddin, Shahadat
Quinn, Julian M.W.
Moni, Mohammad Ali
A deep learning approach using effective preprocessing techniques to detect COVID-19 from chest CT-scan and X-ray images
title A deep learning approach using effective preprocessing techniques to detect COVID-19 from chest CT-scan and X-ray images
title_full A deep learning approach using effective preprocessing techniques to detect COVID-19 from chest CT-scan and X-ray images
title_fullStr A deep learning approach using effective preprocessing techniques to detect COVID-19 from chest CT-scan and X-ray images
title_full_unstemmed A deep learning approach using effective preprocessing techniques to detect COVID-19 from chest CT-scan and X-ray images
title_short A deep learning approach using effective preprocessing techniques to detect COVID-19 from chest CT-scan and X-ray images
title_sort deep learning approach using effective preprocessing techniques to detect covid-19 from chest ct-scan and x-ray images
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8566098/
https://www.ncbi.nlm.nih.gov/pubmed/34781234
http://dx.doi.org/10.1016/j.compbiomed.2021.105014
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