Cargando…

Predicting Synaptic Connectivity for Large-Scale Microcircuit Simulations Using Snudda

Simulation of large-scale networks of neurons is an important approach to understanding and interpreting experimental data from healthy and diseased brains. Owing to the rapid development of simulation software and the accumulation of quantitative data of different neuronal types, it is possible to...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hjorth, J. J. Johannes, Hellgren Kotaleski, Jeanette, Kozlov, Alexander
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Springer US 2021
Materias:	Software Original Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8566446/ https://www.ncbi.nlm.nih.gov/pubmed/34282528 http://dx.doi.org/10.1007/s12021-021-09531-w

Ejemplares similares

Dopaminergic and Cholinergic Modulation of Large Scale Networks in silico Using Snudda
por: Frost Nylen, Johanna, et al.
Publicado: (2021)

The microcircuits of striatum in silico
por: Hjorth, J. J. Johannes, et al.
Publicado: (2020)

The roles of surround inhibition for the intrinsic function of the striatum, analyzed in silico
por: Frost Nylén, Johanna, et al.
Publicado: (2023)

A GPU-based computational framework that bridges neuron simulation and artificial intelligence
por: Zhang, Yichen, et al.
Publicado: (2023)

Modelling homeostatic control of high-frequency post-synaptic transmission and its effect on metabolic efficiency in the auditory brainstem
por: Sweeney, Yann, et al.
Publicado: (2013)

Large-Scale Brain Simulation and Disorders of Consciousness. Mapping Technical and Conceptual Issues
por: Farisco, Michele, et al.
Publicado: (2018)

The theory on and software simulating large-scale genomic data for genotype-by-environment interactions
por: Li, Xiujin, et al.
Publicado: (2021)

Action selection performance of a reconfigurable basal ganglia inspired model with Hebbian–Bayesian Go-NoGo connectivity
por: Berthet, Pierre, et al.
Publicado: (2012)

Signal enhancement in the output stage of the basal ganglia by synaptic short-term plasticity in the direct, indirect, and hyperdirect pathways
por: Lindahl, Mikael, et al.
Publicado: (2013)

Virtual Grid Engine: a simulated grid engine environment for large-scale supercomputers
por: Ito, Satoshi, et al.
Publicado: (2019)

Striatal Fast-Spiking Interneurons: From Firing Patterns to Postsynaptic Impact
por: Klaus, Andreas, et al.
Publicado: (2011)

Connecting MOOSE and NeuroRD through MUSIC: towards a communication framework for multi-scale modeling
por: Brandi, Maya, et al.
Publicado: (2011)

Run-Time Interoperability Between Neuronal Network Simulators Based on the MUSIC Framework
por: Djurfeldt, Mikael, et al.
Publicado: (2010)

Probabilistic inference of synaptic dynamics in neocortical microcircuits
por: Costa, Rui P, et al.
Publicado: (2013)

Analysis of Synaptic Microcircuits in the Mushroom Bodies of the Honeybee
por: Groh, Claudia, et al.
Publicado: (2020)

SCANPY: large-scale single-cell gene expression data analysis
por: Wolf, F. Alexander, et al.
Publicado: (2018)

Untangling Cortico-Striatal Connectivity and Cross-Frequency Coupling in L-DOPA-Induced Dyskinesia
por: Belić, Jovana J., et al.
Publicado: (2016)

Efficient Integration of Coupled Electrical-Chemical Systems in Multiscale Neuronal Simulations
por: Brocke, Ekaterina, et al.
Publicado: (2016)

Multirate method for co-simulation of electrical-chemical systems in multiscale modeling
por: Brocke, Ekaterina, et al.
Publicado: (2017)

CRNPRED: highly accurate prediction of one-dimensional protein structures by large-scale critical random networks
por: Kinjo, Akira R, et al.
Publicado: (2006)

Basal Ganglia Neuromodulation Over Multiple Temporal and Structural Scales—Simulations of Direct Pathway MSNs Investigate the Fast Onset of Dopaminergic Effects and Predict the Role of Kv4.2
por: Lindroos, Robert, et al.
Publicado: (2018)

Short term plasticity within the basal ganglia - a systems level computational investigation
por: Lindahl, Mikael, et al.
Publicado: (2011)

Untangling Basal Ganglia Network Dynamics and Function: Role of Dopamine Depletion and Inhibition Investigated in a Spiking Network Model
por: Lindahl, Mikael, et al.
Publicado: (2017)

Cells in Silico – introducing a high-performance framework for large-scale tissue modeling
por: Berghoff, Marco, et al.
Publicado: (2020)

ExUTR: a novel pipeline for large-scale prediction of 3′-UTR sequences from NGS data
por: Huang, Zixia, et al.
Publicado: (2017)

Estimating the location and size of retinal injections from orthogonal images of an intact retina
por: Hjorth, J. J. Johannes, et al.
Publicado: (2015)

Dynamics of neocortical networks: connectivity beyond the canonical microcircuit
por: Luhmann, Heiko J.
Publicado: (2023)

Probabilistic inference of short-term synaptic plasticity in neocortical microcircuits
por: Costa, Rui P., et al.
Publicado: (2013)

Familiarity Detection is an Intrinsic Property of Cortical Microcircuits with Bidirectional Synaptic Plasticity
por: Zhang, Xiaoyu, et al.
Publicado: (2017)

Bulbar Microcircuit Model Predicts Connectivity and Roles of Interneurons in Odor Coding
por: Gilra, Aditya, et al.
Publicado: (2015)

CLAST: CUDA implemented large-scale alignment search tool
por: Yano, Masahiro, et al.
Publicado: (2014)

AMADAR: a python-based package for large scale prediction of Diels–Alder transition state geometries and IRC path analysis
por: Isamura, Bienfait K., et al.
Publicado: (2022)

Online GESS: prediction of miRNA-like off-target effects in large-scale RNAi screen data by seed region analysis
por: Yilmazel, Bahar, et al.
Publicado: (2014)

DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization
por: Cannon, Steven B, et al.
Publicado: (2003)

GECKO: a complete large-scale gene expression analysis platform
por: Theilhaber, Joachim, et al.
Publicado: (2004)

SNAVI: Desktop application for analysis and visualization of large-scale signaling networks
por: Ma'ayan, Avi, et al.
Publicado: (2009)

Web tools for large-scale 3D biological images and atlases
por: Husz, Zsolt L, et al.
Publicado: (2012)

Improved eukaryotic detection compatible with large-scale automated analysis of metagenomes
por: Bazant, Wojtek, et al.
Publicado: (2023)

Interplay between periodic stimulation and GABAergic inhibition in striatal network oscillations
por: Belić, Jovana J., et al.
Publicado: (2017)

M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species
por: Treangen, Todd J, et al.
Publicado: (2006)

Cannot write session to /tmp/vufind_sessions/sess_4h5do9omojpl5dn9cgmev97mmb