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A systematic approach for developing mechanistic models for realistic simulation of cancer cell motion and deformation
Understanding and predicting metastatic progression and developing novel diagnostic methods can highly benefit from accurate models of the deformability of cancer cells. Spring-based network models of cells can provide a versatile way of integrating deforming cancer cells with other physical and bio...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8566452/ https://www.ncbi.nlm.nih.gov/pubmed/34732772 http://dx.doi.org/10.1038/s41598-021-00905-3 |
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author | Keshavarz Motamed, Pouyan Maftoon, Nima |
author_facet | Keshavarz Motamed, Pouyan Maftoon, Nima |
author_sort | Keshavarz Motamed, Pouyan |
collection | PubMed |
description | Understanding and predicting metastatic progression and developing novel diagnostic methods can highly benefit from accurate models of the deformability of cancer cells. Spring-based network models of cells can provide a versatile way of integrating deforming cancer cells with other physical and biochemical phenomena, but these models have parameters that need to be accurately identified. In this study we established a systematic method for identifying parameters of spring-network models of cancer cells. We developed a genetic algorithm and coupled it to the fluid–solid interaction model of the cell, immersed in blood plasma or other fluids, to minimize the difference between numerical and experimental data of cell motion and deformation. We used the method to create a validated model for the human lung cancer cell line (H1975), employing existing experimental data of its deformation in a narrow microchannel constriction considering cell-wall friction. Furthermore, using this validated model with accurately identified parameters, we studied the details of motion and deformation of the cancer cell in the microchannel constriction and the effects of flow rates on them. We found that ignoring the viscosity of the cell membrane and the friction between the cell and wall can introduce remarkable errors. |
format | Online Article Text |
id | pubmed-8566452 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-85664522021-11-04 A systematic approach for developing mechanistic models for realistic simulation of cancer cell motion and deformation Keshavarz Motamed, Pouyan Maftoon, Nima Sci Rep Article Understanding and predicting metastatic progression and developing novel diagnostic methods can highly benefit from accurate models of the deformability of cancer cells. Spring-based network models of cells can provide a versatile way of integrating deforming cancer cells with other physical and biochemical phenomena, but these models have parameters that need to be accurately identified. In this study we established a systematic method for identifying parameters of spring-network models of cancer cells. We developed a genetic algorithm and coupled it to the fluid–solid interaction model of the cell, immersed in blood plasma or other fluids, to minimize the difference between numerical and experimental data of cell motion and deformation. We used the method to create a validated model for the human lung cancer cell line (H1975), employing existing experimental data of its deformation in a narrow microchannel constriction considering cell-wall friction. Furthermore, using this validated model with accurately identified parameters, we studied the details of motion and deformation of the cancer cell in the microchannel constriction and the effects of flow rates on them. We found that ignoring the viscosity of the cell membrane and the friction between the cell and wall can introduce remarkable errors. Nature Publishing Group UK 2021-11-03 /pmc/articles/PMC8566452/ /pubmed/34732772 http://dx.doi.org/10.1038/s41598-021-00905-3 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Keshavarz Motamed, Pouyan Maftoon, Nima A systematic approach for developing mechanistic models for realistic simulation of cancer cell motion and deformation |
title | A systematic approach for developing mechanistic models for realistic simulation of cancer cell motion and deformation |
title_full | A systematic approach for developing mechanistic models for realistic simulation of cancer cell motion and deformation |
title_fullStr | A systematic approach for developing mechanistic models for realistic simulation of cancer cell motion and deformation |
title_full_unstemmed | A systematic approach for developing mechanistic models for realistic simulation of cancer cell motion and deformation |
title_short | A systematic approach for developing mechanistic models for realistic simulation of cancer cell motion and deformation |
title_sort | systematic approach for developing mechanistic models for realistic simulation of cancer cell motion and deformation |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8566452/ https://www.ncbi.nlm.nih.gov/pubmed/34732772 http://dx.doi.org/10.1038/s41598-021-00905-3 |
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