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A systematic approach for developing mechanistic models for realistic simulation of cancer cell motion and deformation

Understanding and predicting metastatic progression and developing novel diagnostic methods can highly benefit from accurate models of the deformability of cancer cells. Spring-based network models of cells can provide a versatile way of integrating deforming cancer cells with other physical and bio...

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Autores principales: Keshavarz Motamed, Pouyan, Maftoon, Nima
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8566452/
https://www.ncbi.nlm.nih.gov/pubmed/34732772
http://dx.doi.org/10.1038/s41598-021-00905-3
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author Keshavarz Motamed, Pouyan
Maftoon, Nima
author_facet Keshavarz Motamed, Pouyan
Maftoon, Nima
author_sort Keshavarz Motamed, Pouyan
collection PubMed
description Understanding and predicting metastatic progression and developing novel diagnostic methods can highly benefit from accurate models of the deformability of cancer cells. Spring-based network models of cells can provide a versatile way of integrating deforming cancer cells with other physical and biochemical phenomena, but these models have parameters that need to be accurately identified. In this study we established a systematic method for identifying parameters of spring-network models of cancer cells. We developed a genetic algorithm and coupled it to the fluid–solid interaction model of the cell, immersed in blood plasma or other fluids, to minimize the difference between numerical and experimental data of cell motion and deformation. We used the method to create a validated model for the human lung cancer cell line (H1975), employing existing experimental data of its deformation in a narrow microchannel constriction considering cell-wall friction. Furthermore, using this validated model with accurately identified parameters, we studied the details of motion and deformation of the cancer cell in the microchannel constriction and the effects of flow rates on them. We found that ignoring the viscosity of the cell membrane and the friction between the cell and wall can introduce remarkable errors.
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spelling pubmed-85664522021-11-04 A systematic approach for developing mechanistic models for realistic simulation of cancer cell motion and deformation Keshavarz Motamed, Pouyan Maftoon, Nima Sci Rep Article Understanding and predicting metastatic progression and developing novel diagnostic methods can highly benefit from accurate models of the deformability of cancer cells. Spring-based network models of cells can provide a versatile way of integrating deforming cancer cells with other physical and biochemical phenomena, but these models have parameters that need to be accurately identified. In this study we established a systematic method for identifying parameters of spring-network models of cancer cells. We developed a genetic algorithm and coupled it to the fluid–solid interaction model of the cell, immersed in blood plasma or other fluids, to minimize the difference between numerical and experimental data of cell motion and deformation. We used the method to create a validated model for the human lung cancer cell line (H1975), employing existing experimental data of its deformation in a narrow microchannel constriction considering cell-wall friction. Furthermore, using this validated model with accurately identified parameters, we studied the details of motion and deformation of the cancer cell in the microchannel constriction and the effects of flow rates on them. We found that ignoring the viscosity of the cell membrane and the friction between the cell and wall can introduce remarkable errors. Nature Publishing Group UK 2021-11-03 /pmc/articles/PMC8566452/ /pubmed/34732772 http://dx.doi.org/10.1038/s41598-021-00905-3 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Keshavarz Motamed, Pouyan
Maftoon, Nima
A systematic approach for developing mechanistic models for realistic simulation of cancer cell motion and deformation
title A systematic approach for developing mechanistic models for realistic simulation of cancer cell motion and deformation
title_full A systematic approach for developing mechanistic models for realistic simulation of cancer cell motion and deformation
title_fullStr A systematic approach for developing mechanistic models for realistic simulation of cancer cell motion and deformation
title_full_unstemmed A systematic approach for developing mechanistic models for realistic simulation of cancer cell motion and deformation
title_short A systematic approach for developing mechanistic models for realistic simulation of cancer cell motion and deformation
title_sort systematic approach for developing mechanistic models for realistic simulation of cancer cell motion and deformation
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8566452/
https://www.ncbi.nlm.nih.gov/pubmed/34732772
http://dx.doi.org/10.1038/s41598-021-00905-3
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