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Integrating Stochastic and Deterministic Process in the Biogeography of N(2)-Fixing Cyanobacterium Candidatus Atelocyanobacterium Thalassa
UCYN-A is one of the most widespread and important marine diazotrophs. Its unusual distribution in both cold/warm and coastal/oceanic waters challenges current understanding about what drives the biogeography of diazotrophs. This study assessed the community assembly processes of the nitrogen-fixing...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8566894/ https://www.ncbi.nlm.nih.gov/pubmed/34745020 http://dx.doi.org/10.3389/fmicb.2021.654646 |
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author | Li, Liuyang Wu, Chao Huang, Danyue Ding, Changling Wei, Yuqiu Sun, Jun |
author_facet | Li, Liuyang Wu, Chao Huang, Danyue Ding, Changling Wei, Yuqiu Sun, Jun |
author_sort | Li, Liuyang |
collection | PubMed |
description | UCYN-A is one of the most widespread and important marine diazotrophs. Its unusual distribution in both cold/warm and coastal/oceanic waters challenges current understanding about what drives the biogeography of diazotrophs. This study assessed the community assembly processes of the nitrogen-fixing cyanobacterium UCYN-A, developing a framework of assembly processes underpinning the microbial biogeography and diversity. High-throughput sequencing and a qPCR approach targeting the nifH gene were used to investigate three tropical seas: the Bay of Bengal, the Western Pacific Ocean, and the South China Sea. Based on the neutral community model and two types of null models calculating the β-nearest taxon index and the normalized stochasticity ratio, we found that stochastic assembly processes could explain 66–92% of the community assembly; thus, they exert overwhelming influence on UCYN-A biogeography and diversity. Among the deterministic processes, temperature and coastal/oceanic position appeared to be the principal environmental factors driving UCYN-A diversity. In addition, a close linkage between assembly processes and UCYN-A abundance/diversity/drivers can provide clues for the unusual global distribution of UCYN-A. |
format | Online Article Text |
id | pubmed-8566894 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-85668942021-11-05 Integrating Stochastic and Deterministic Process in the Biogeography of N(2)-Fixing Cyanobacterium Candidatus Atelocyanobacterium Thalassa Li, Liuyang Wu, Chao Huang, Danyue Ding, Changling Wei, Yuqiu Sun, Jun Front Microbiol Microbiology UCYN-A is one of the most widespread and important marine diazotrophs. Its unusual distribution in both cold/warm and coastal/oceanic waters challenges current understanding about what drives the biogeography of diazotrophs. This study assessed the community assembly processes of the nitrogen-fixing cyanobacterium UCYN-A, developing a framework of assembly processes underpinning the microbial biogeography and diversity. High-throughput sequencing and a qPCR approach targeting the nifH gene were used to investigate three tropical seas: the Bay of Bengal, the Western Pacific Ocean, and the South China Sea. Based on the neutral community model and two types of null models calculating the β-nearest taxon index and the normalized stochasticity ratio, we found that stochastic assembly processes could explain 66–92% of the community assembly; thus, they exert overwhelming influence on UCYN-A biogeography and diversity. Among the deterministic processes, temperature and coastal/oceanic position appeared to be the principal environmental factors driving UCYN-A diversity. In addition, a close linkage between assembly processes and UCYN-A abundance/diversity/drivers can provide clues for the unusual global distribution of UCYN-A. Frontiers Media S.A. 2021-10-21 /pmc/articles/PMC8566894/ /pubmed/34745020 http://dx.doi.org/10.3389/fmicb.2021.654646 Text en Copyright © 2021 Li, Wu, Huang, Ding, Wei and Sun. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology Li, Liuyang Wu, Chao Huang, Danyue Ding, Changling Wei, Yuqiu Sun, Jun Integrating Stochastic and Deterministic Process in the Biogeography of N(2)-Fixing Cyanobacterium Candidatus Atelocyanobacterium Thalassa |
title | Integrating Stochastic and Deterministic Process in the Biogeography of N(2)-Fixing Cyanobacterium Candidatus Atelocyanobacterium Thalassa |
title_full | Integrating Stochastic and Deterministic Process in the Biogeography of N(2)-Fixing Cyanobacterium Candidatus Atelocyanobacterium Thalassa |
title_fullStr | Integrating Stochastic and Deterministic Process in the Biogeography of N(2)-Fixing Cyanobacterium Candidatus Atelocyanobacterium Thalassa |
title_full_unstemmed | Integrating Stochastic and Deterministic Process in the Biogeography of N(2)-Fixing Cyanobacterium Candidatus Atelocyanobacterium Thalassa |
title_short | Integrating Stochastic and Deterministic Process in the Biogeography of N(2)-Fixing Cyanobacterium Candidatus Atelocyanobacterium Thalassa |
title_sort | integrating stochastic and deterministic process in the biogeography of n(2)-fixing cyanobacterium candidatus atelocyanobacterium thalassa |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8566894/ https://www.ncbi.nlm.nih.gov/pubmed/34745020 http://dx.doi.org/10.3389/fmicb.2021.654646 |
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