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PEERS — An Open Science “Platform for the Exchange of Experimental Research Standards” in Biomedicine

Laboratory workflows and preclinical models have become increasingly diverse and complex. Confronted with the dilemma of a multitude of information with ambiguous relevance for their specific experiments, scientists run the risk of overlooking critical factors that can influence the planning, conduc...

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Autores principales: Sil, Annesha, Bespalov, Anton, Dalla, Christina, Ferland-Beckham, Chantelle, Herremans, Arnoud, Karantzalos, Konstantinos, Kas, Martien J., Kokras, Nikolaos, Parnham, Michael J., Pavlidi, Pavlina, Pristouris, Kostis, Steckler, Thomas, Riedel, Gernot, Emmerich, Christoph H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8567102/
https://www.ncbi.nlm.nih.gov/pubmed/34744655
http://dx.doi.org/10.3389/fnbeh.2021.755812
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author Sil, Annesha
Bespalov, Anton
Dalla, Christina
Ferland-Beckham, Chantelle
Herremans, Arnoud
Karantzalos, Konstantinos
Kas, Martien J.
Kokras, Nikolaos
Parnham, Michael J.
Pavlidi, Pavlina
Pristouris, Kostis
Steckler, Thomas
Riedel, Gernot
Emmerich, Christoph H.
author_facet Sil, Annesha
Bespalov, Anton
Dalla, Christina
Ferland-Beckham, Chantelle
Herremans, Arnoud
Karantzalos, Konstantinos
Kas, Martien J.
Kokras, Nikolaos
Parnham, Michael J.
Pavlidi, Pavlina
Pristouris, Kostis
Steckler, Thomas
Riedel, Gernot
Emmerich, Christoph H.
author_sort Sil, Annesha
collection PubMed
description Laboratory workflows and preclinical models have become increasingly diverse and complex. Confronted with the dilemma of a multitude of information with ambiguous relevance for their specific experiments, scientists run the risk of overlooking critical factors that can influence the planning, conduct and results of studies and that should have been considered a priori. To address this problem, we developed “PEERS” (Platform for the Exchange of Experimental Research Standards), an open-access online platform that is built to aid scientists in determining which experimental factors and variables are most likely to affect the outcome of a specific test, model or assay and therefore ought to be considered during the design, execution and reporting stages. The PEERS database is categorized into in vivo and in vitro experiments and provides lists of factors derived from scientific literature that have been deemed critical for experimentation. The platform is based on a structured and transparent system for rating the strength of evidence related to each identified factor and its relevance for a specific method/model. In this context, the rating procedure will not solely be limited to the PEERS working group but will also allow for a community-based grading of evidence. We here describe a working prototype using the Open Field paradigm in rodents and present the selection of factors specific to each experimental setup and the rating system. PEERS not only offers users the possibility to search for information to facilitate experimental rigor, but also draws on the engagement of the scientific community to actively expand the information contained within the platform. Collectively, by helping scientists search for specific factors relevant to their experiments, and to share experimental knowledge in a standardized manner, PEERS will serve as a collaborative exchange and analysis tool to enhance data validity and robustness as well as the reproducibility of preclinical research. PEERS offers a vetted, independent tool by which to judge the quality of information available on a certain test or model, identifies knowledge gaps and provides guidance on the key methodological considerations that should be prioritized to ensure that preclinical research is conducted to the highest standards and best practice.
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spelling pubmed-85671022021-11-05 PEERS — An Open Science “Platform for the Exchange of Experimental Research Standards” in Biomedicine Sil, Annesha Bespalov, Anton Dalla, Christina Ferland-Beckham, Chantelle Herremans, Arnoud Karantzalos, Konstantinos Kas, Martien J. Kokras, Nikolaos Parnham, Michael J. Pavlidi, Pavlina Pristouris, Kostis Steckler, Thomas Riedel, Gernot Emmerich, Christoph H. Front Behav Neurosci Behavioral Neuroscience Laboratory workflows and preclinical models have become increasingly diverse and complex. Confronted with the dilemma of a multitude of information with ambiguous relevance for their specific experiments, scientists run the risk of overlooking critical factors that can influence the planning, conduct and results of studies and that should have been considered a priori. To address this problem, we developed “PEERS” (Platform for the Exchange of Experimental Research Standards), an open-access online platform that is built to aid scientists in determining which experimental factors and variables are most likely to affect the outcome of a specific test, model or assay and therefore ought to be considered during the design, execution and reporting stages. The PEERS database is categorized into in vivo and in vitro experiments and provides lists of factors derived from scientific literature that have been deemed critical for experimentation. The platform is based on a structured and transparent system for rating the strength of evidence related to each identified factor and its relevance for a specific method/model. In this context, the rating procedure will not solely be limited to the PEERS working group but will also allow for a community-based grading of evidence. We here describe a working prototype using the Open Field paradigm in rodents and present the selection of factors specific to each experimental setup and the rating system. PEERS not only offers users the possibility to search for information to facilitate experimental rigor, but also draws on the engagement of the scientific community to actively expand the information contained within the platform. Collectively, by helping scientists search for specific factors relevant to their experiments, and to share experimental knowledge in a standardized manner, PEERS will serve as a collaborative exchange and analysis tool to enhance data validity and robustness as well as the reproducibility of preclinical research. PEERS offers a vetted, independent tool by which to judge the quality of information available on a certain test or model, identifies knowledge gaps and provides guidance on the key methodological considerations that should be prioritized to ensure that preclinical research is conducted to the highest standards and best practice. Frontiers Media S.A. 2021-10-21 /pmc/articles/PMC8567102/ /pubmed/34744655 http://dx.doi.org/10.3389/fnbeh.2021.755812 Text en Copyright © 2021 Sil, Bespalov, Dalla, Ferland-Beckham, Herremans, Karantzalos, Kas, Kokras, Parnham, Pavlidi, Pristouris, Steckler, Riedel and Emmerich. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Behavioral Neuroscience
Sil, Annesha
Bespalov, Anton
Dalla, Christina
Ferland-Beckham, Chantelle
Herremans, Arnoud
Karantzalos, Konstantinos
Kas, Martien J.
Kokras, Nikolaos
Parnham, Michael J.
Pavlidi, Pavlina
Pristouris, Kostis
Steckler, Thomas
Riedel, Gernot
Emmerich, Christoph H.
PEERS — An Open Science “Platform for the Exchange of Experimental Research Standards” in Biomedicine
title PEERS — An Open Science “Platform for the Exchange of Experimental Research Standards” in Biomedicine
title_full PEERS — An Open Science “Platform for the Exchange of Experimental Research Standards” in Biomedicine
title_fullStr PEERS — An Open Science “Platform for the Exchange of Experimental Research Standards” in Biomedicine
title_full_unstemmed PEERS — An Open Science “Platform for the Exchange of Experimental Research Standards” in Biomedicine
title_short PEERS — An Open Science “Platform for the Exchange of Experimental Research Standards” in Biomedicine
title_sort peers — an open science “platform for the exchange of experimental research standards” in biomedicine
topic Behavioral Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8567102/
https://www.ncbi.nlm.nih.gov/pubmed/34744655
http://dx.doi.org/10.3389/fnbeh.2021.755812
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