Cargando…

Community Assembly and Co-occurrence Patterns Underlying the Core and Satellite Bacterial Sub-communities in the Tibetan Lakes

Microbial communities normally comprise a few core species and large numbers of satellite species. These two sub-communities have different ecological and functional roles in natural environments, but knowledge on the assembly processes and co-occurrence patterns of the core and satellite species in...

Descripción completa

Detalles Bibliográficos
Autores principales: Yan, Qi, Deng, Jianming, Wang, Feng, Liu, Yongqin, Liu, Keshao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8567192/
https://www.ncbi.nlm.nih.gov/pubmed/34745022
http://dx.doi.org/10.3389/fmicb.2021.695465
_version_ 1784594181998510080
author Yan, Qi
Deng, Jianming
Wang, Feng
Liu, Yongqin
Liu, Keshao
author_facet Yan, Qi
Deng, Jianming
Wang, Feng
Liu, Yongqin
Liu, Keshao
author_sort Yan, Qi
collection PubMed
description Microbial communities normally comprise a few core species and large numbers of satellite species. These two sub-communities have different ecological and functional roles in natural environments, but knowledge on the assembly processes and co-occurrence patterns of the core and satellite species in Tibetan lakes is still sparse. Here, we investigated the ecological processes and co-occurrence relationships of the core and satellite bacterial sub-communities in the Tibetan lakes via 454 sequencing of 16S rRNA gene. Our studies indicated that the core and satellite bacterial sub-communities have similar dominant phyla (Proteobacteria, Bacteroidetes, and Actinobacteria). But the core sub-communities were less diverse and exhibited a stronger distance-decay relationship than the satellite sub-communities. In addition, topological properties of nodes in the network demonstrated that the core sub-communities had more complex and stable co-occurrence associations and were primarily driven by stochastic processes (58.19%). By contrast, the satellite sub-communities were mainly governed by deterministic processes (62.17%). Overall, this study demonstrated the differences in the core and satellite sub-community assembly and network stability, suggesting the importance of considering species traits to understand the biogeographic distribution of bacterial communities in high-altitude lakes.
format Online
Article
Text
id pubmed-8567192
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-85671922021-11-05 Community Assembly and Co-occurrence Patterns Underlying the Core and Satellite Bacterial Sub-communities in the Tibetan Lakes Yan, Qi Deng, Jianming Wang, Feng Liu, Yongqin Liu, Keshao Front Microbiol Microbiology Microbial communities normally comprise a few core species and large numbers of satellite species. These two sub-communities have different ecological and functional roles in natural environments, but knowledge on the assembly processes and co-occurrence patterns of the core and satellite species in Tibetan lakes is still sparse. Here, we investigated the ecological processes and co-occurrence relationships of the core and satellite bacterial sub-communities in the Tibetan lakes via 454 sequencing of 16S rRNA gene. Our studies indicated that the core and satellite bacterial sub-communities have similar dominant phyla (Proteobacteria, Bacteroidetes, and Actinobacteria). But the core sub-communities were less diverse and exhibited a stronger distance-decay relationship than the satellite sub-communities. In addition, topological properties of nodes in the network demonstrated that the core sub-communities had more complex and stable co-occurrence associations and were primarily driven by stochastic processes (58.19%). By contrast, the satellite sub-communities were mainly governed by deterministic processes (62.17%). Overall, this study demonstrated the differences in the core and satellite sub-community assembly and network stability, suggesting the importance of considering species traits to understand the biogeographic distribution of bacterial communities in high-altitude lakes. Frontiers Media S.A. 2021-09-17 /pmc/articles/PMC8567192/ /pubmed/34745022 http://dx.doi.org/10.3389/fmicb.2021.695465 Text en Copyright © 2021 Yan, Deng, Wang, Liu and Liu. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Yan, Qi
Deng, Jianming
Wang, Feng
Liu, Yongqin
Liu, Keshao
Community Assembly and Co-occurrence Patterns Underlying the Core and Satellite Bacterial Sub-communities in the Tibetan Lakes
title Community Assembly and Co-occurrence Patterns Underlying the Core and Satellite Bacterial Sub-communities in the Tibetan Lakes
title_full Community Assembly and Co-occurrence Patterns Underlying the Core and Satellite Bacterial Sub-communities in the Tibetan Lakes
title_fullStr Community Assembly and Co-occurrence Patterns Underlying the Core and Satellite Bacterial Sub-communities in the Tibetan Lakes
title_full_unstemmed Community Assembly and Co-occurrence Patterns Underlying the Core and Satellite Bacterial Sub-communities in the Tibetan Lakes
title_short Community Assembly and Co-occurrence Patterns Underlying the Core and Satellite Bacterial Sub-communities in the Tibetan Lakes
title_sort community assembly and co-occurrence patterns underlying the core and satellite bacterial sub-communities in the tibetan lakes
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8567192/
https://www.ncbi.nlm.nih.gov/pubmed/34745022
http://dx.doi.org/10.3389/fmicb.2021.695465
work_keys_str_mv AT yanqi communityassemblyandcooccurrencepatternsunderlyingthecoreandsatellitebacterialsubcommunitiesinthetibetanlakes
AT dengjianming communityassemblyandcooccurrencepatternsunderlyingthecoreandsatellitebacterialsubcommunitiesinthetibetanlakes
AT wangfeng communityassemblyandcooccurrencepatternsunderlyingthecoreandsatellitebacterialsubcommunitiesinthetibetanlakes
AT liuyongqin communityassemblyandcooccurrencepatternsunderlyingthecoreandsatellitebacterialsubcommunitiesinthetibetanlakes
AT liukeshao communityassemblyandcooccurrencepatternsunderlyingthecoreandsatellitebacterialsubcommunitiesinthetibetanlakes