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Development and validation of ferroptosis-related lncRNAs prognosis signatures in kidney renal clear cell carcinoma

BACKGROUND: Ferroptosis is a recently recognised new type of cell death which may be a potential target for cancer therapy. In the present study, we aimed to screen ferroptosis-related differentially expressed long non-coding RNAs as biomarkers to predict the outcome of kidney renal clear cell carci...

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Autores principales: Xing, Xiao-Liang, Yao, Zhi-Yong, Ou, Jialan, Xing, Chaoqun, Li, Feng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8567554/
https://www.ncbi.nlm.nih.gov/pubmed/34736453
http://dx.doi.org/10.1186/s12935-021-02284-1
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author Xing, Xiao-Liang
Yao, Zhi-Yong
Ou, Jialan
Xing, Chaoqun
Li, Feng
author_facet Xing, Xiao-Liang
Yao, Zhi-Yong
Ou, Jialan
Xing, Chaoqun
Li, Feng
author_sort Xing, Xiao-Liang
collection PubMed
description BACKGROUND: Ferroptosis is a recently recognised new type of cell death which may be a potential target for cancer therapy. In the present study, we aimed to screen ferroptosis-related differentially expressed long non-coding RNAs as biomarkers to predict the outcome of kidney renal clear cell carcinoma. METHODS: RNAseq count data and corresponding clinical information were obtained from the Cancer Genome Atlas database. Lists of ferroptosis-related genes and long non-coding RNAs were obtained from the FerrDb and GENCODE databases, respectively. The candidate prognostic signatures were screened by Cox regression analyses and least absolute shrinkage and selection operator analyses. RESULTS: Three ferroptosis-related long non-coding RNAs (DUXAP8, LINC02609, and LUCAT1) were significantly correlated with the overall survival of kidney renal clear cell carcinoma independently. Kidney renal clear cell carcinoma patients with high-risk values displayed worse OS. Meanwhile, the expression of these three ferroptosis-related long non-coding RNAs and their risk scores were significantly correlated with clinicopathological features. Principal component analyses showed that patients with kidney renal clear cell carcinoma have differential risk values were well distinguished by the three ferroptosis-related long non-coding RNAs. CONCLUSIONS: The present study suggests that the risk assessment model constructed by these three ferroptosis-related long non-coding RNAs could accurately predict the outcome of kidney renal clear cell carcinoma. We also provide a novel perspective for cancer prognosis screening. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12935-021-02284-1.
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spelling pubmed-85675542021-11-04 Development and validation of ferroptosis-related lncRNAs prognosis signatures in kidney renal clear cell carcinoma Xing, Xiao-Liang Yao, Zhi-Yong Ou, Jialan Xing, Chaoqun Li, Feng Cancer Cell Int Primary Research BACKGROUND: Ferroptosis is a recently recognised new type of cell death which may be a potential target for cancer therapy. In the present study, we aimed to screen ferroptosis-related differentially expressed long non-coding RNAs as biomarkers to predict the outcome of kidney renal clear cell carcinoma. METHODS: RNAseq count data and corresponding clinical information were obtained from the Cancer Genome Atlas database. Lists of ferroptosis-related genes and long non-coding RNAs were obtained from the FerrDb and GENCODE databases, respectively. The candidate prognostic signatures were screened by Cox regression analyses and least absolute shrinkage and selection operator analyses. RESULTS: Three ferroptosis-related long non-coding RNAs (DUXAP8, LINC02609, and LUCAT1) were significantly correlated with the overall survival of kidney renal clear cell carcinoma independently. Kidney renal clear cell carcinoma patients with high-risk values displayed worse OS. Meanwhile, the expression of these three ferroptosis-related long non-coding RNAs and their risk scores were significantly correlated with clinicopathological features. Principal component analyses showed that patients with kidney renal clear cell carcinoma have differential risk values were well distinguished by the three ferroptosis-related long non-coding RNAs. CONCLUSIONS: The present study suggests that the risk assessment model constructed by these three ferroptosis-related long non-coding RNAs could accurately predict the outcome of kidney renal clear cell carcinoma. We also provide a novel perspective for cancer prognosis screening. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s12935-021-02284-1. BioMed Central 2021-11-04 /pmc/articles/PMC8567554/ /pubmed/34736453 http://dx.doi.org/10.1186/s12935-021-02284-1 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
spellingShingle Primary Research
Xing, Xiao-Liang
Yao, Zhi-Yong
Ou, Jialan
Xing, Chaoqun
Li, Feng
Development and validation of ferroptosis-related lncRNAs prognosis signatures in kidney renal clear cell carcinoma
title Development and validation of ferroptosis-related lncRNAs prognosis signatures in kidney renal clear cell carcinoma
title_full Development and validation of ferroptosis-related lncRNAs prognosis signatures in kidney renal clear cell carcinoma
title_fullStr Development and validation of ferroptosis-related lncRNAs prognosis signatures in kidney renal clear cell carcinoma
title_full_unstemmed Development and validation of ferroptosis-related lncRNAs prognosis signatures in kidney renal clear cell carcinoma
title_short Development and validation of ferroptosis-related lncRNAs prognosis signatures in kidney renal clear cell carcinoma
title_sort development and validation of ferroptosis-related lncrnas prognosis signatures in kidney renal clear cell carcinoma
topic Primary Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8567554/
https://www.ncbi.nlm.nih.gov/pubmed/34736453
http://dx.doi.org/10.1186/s12935-021-02284-1
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