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Regional radiomics similarity networks (R2SNs) in the human brain: Reproducibility, small-world properties and a biological basis
A structural covariance network (SCN) has been used successfully in structural magnetic resonance imaging (sMRI) studies. However, most SCNs have been constructed by a unitary marker that is insensitive for discriminating different disease phases. The aim of this study was to devise a novel regional...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MIT Press
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8567836/ https://www.ncbi.nlm.nih.gov/pubmed/34746627 http://dx.doi.org/10.1162/netn_a_00200 |
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author | Zhao, Kun Zheng, Qiang Che, Tongtong Dyrba, Martin Li, Qiongling Ding, Yanhui Zheng, Yuanjie Liu, Yong Li, Shuyu |
author_facet | Zhao, Kun Zheng, Qiang Che, Tongtong Dyrba, Martin Li, Qiongling Ding, Yanhui Zheng, Yuanjie Liu, Yong Li, Shuyu |
author_sort | Zhao, Kun |
collection | PubMed |
description | A structural covariance network (SCN) has been used successfully in structural magnetic resonance imaging (sMRI) studies. However, most SCNs have been constructed by a unitary marker that is insensitive for discriminating different disease phases. The aim of this study was to devise a novel regional radiomics similarity network (R2SN) that could provide more comprehensive information in morphological network analysis. R2SNs were constructed by computing the Pearson correlations between the radiomics features extracted from any pair of regions for each subject (AAL atlas). We further assessed the small-world property of R2SNs, and we evaluated the reproducibility in different datasets and through test-retest analysis. The relationships between the R2SNs and general intelligence/interregional coexpression of genes were also explored. R2SNs could be replicated in different datasets, regardless of the use of different feature subsets. R2SNs showed high reproducibility in the test-retest analysis (intraclass correlation coefficient > 0.7). In addition, the small-word property (σ > 2) and the high correlation between gene expression (R = 0.29, p < 0.001) and general intelligence were determined for R2SNs. Furthermore, the results have also been repeated in the Brainnetome atlas. R2SNs provide a novel, reliable, and biologically plausible method to understand human morphological covariance based on sMRI. |
format | Online Article Text |
id | pubmed-8567836 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | MIT Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-85678362021-11-05 Regional radiomics similarity networks (R2SNs) in the human brain: Reproducibility, small-world properties and a biological basis Zhao, Kun Zheng, Qiang Che, Tongtong Dyrba, Martin Li, Qiongling Ding, Yanhui Zheng, Yuanjie Liu, Yong Li, Shuyu Netw Neurosci Research Article A structural covariance network (SCN) has been used successfully in structural magnetic resonance imaging (sMRI) studies. However, most SCNs have been constructed by a unitary marker that is insensitive for discriminating different disease phases. The aim of this study was to devise a novel regional radiomics similarity network (R2SN) that could provide more comprehensive information in morphological network analysis. R2SNs were constructed by computing the Pearson correlations between the radiomics features extracted from any pair of regions for each subject (AAL atlas). We further assessed the small-world property of R2SNs, and we evaluated the reproducibility in different datasets and through test-retest analysis. The relationships between the R2SNs and general intelligence/interregional coexpression of genes were also explored. R2SNs could be replicated in different datasets, regardless of the use of different feature subsets. R2SNs showed high reproducibility in the test-retest analysis (intraclass correlation coefficient > 0.7). In addition, the small-word property (σ > 2) and the high correlation between gene expression (R = 0.29, p < 0.001) and general intelligence were determined for R2SNs. Furthermore, the results have also been repeated in the Brainnetome atlas. R2SNs provide a novel, reliable, and biologically plausible method to understand human morphological covariance based on sMRI. MIT Press 2021-08-30 /pmc/articles/PMC8567836/ /pubmed/34746627 http://dx.doi.org/10.1162/netn_a_00200 Text en © 2021 Massachusetts Institute of Technology https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. For a full description of the license, please visit https://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Research Article Zhao, Kun Zheng, Qiang Che, Tongtong Dyrba, Martin Li, Qiongling Ding, Yanhui Zheng, Yuanjie Liu, Yong Li, Shuyu Regional radiomics similarity networks (R2SNs) in the human brain: Reproducibility, small-world properties and a biological basis |
title | Regional radiomics similarity networks (R2SNs) in the human brain: Reproducibility, small-world properties and a biological basis |
title_full | Regional radiomics similarity networks (R2SNs) in the human brain: Reproducibility, small-world properties and a biological basis |
title_fullStr | Regional radiomics similarity networks (R2SNs) in the human brain: Reproducibility, small-world properties and a biological basis |
title_full_unstemmed | Regional radiomics similarity networks (R2SNs) in the human brain: Reproducibility, small-world properties and a biological basis |
title_short | Regional radiomics similarity networks (R2SNs) in the human brain: Reproducibility, small-world properties and a biological basis |
title_sort | regional radiomics similarity networks (r2sns) in the human brain: reproducibility, small-world properties and a biological basis |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8567836/ https://www.ncbi.nlm.nih.gov/pubmed/34746627 http://dx.doi.org/10.1162/netn_a_00200 |
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