The complete chloroplast genome of Agapanthus praecox (Agapanthaceae), an ornamental and medicinal plant

Agapanthus praecox is a monocotyledonous, herbaceous, and perennial plant, which has been used as an ornamental and medicinal plant. Here, we assembled and characterized the complete chloroplast (cp) genome of A. praecox by de novo high throughput sequencing. The results revealed that the cp genome...

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Detalles Bibliográficos
Autores principales: Dong, Yan, Zhang, Yangyang, Zhang, Yan, Yue, Jianhua
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8567867/
https://www.ncbi.nlm.nih.gov/pubmed/34746404
http://dx.doi.org/10.1080/23802359.2021.1995516
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author Dong, Yan
Zhang, Yangyang
Zhang, Yan
Yue, Jianhua
author_facet Dong, Yan
Zhang, Yangyang
Zhang, Yan
Yue, Jianhua
author_sort Dong, Yan
collection PubMed
description Agapanthus praecox is a monocotyledonous, herbaceous, and perennial plant, which has been used as an ornamental and medicinal plant. Here, we assembled and characterized the complete chloroplast (cp) genome of A. praecox by de novo high throughput sequencing. The results revealed that the cp genome of A. praecox was 157,038 bp in total length, including a large single-copy (LSC) region of 85,195 bp, a small single-copy (SSC) region of 18,113 bp, and two invert repeats (IR) regions of 26,865 bp. The total plastid genome of A. praecox included 132 genes comprising 86 protein-coding genes, 38 tRNA genes, and eight rRNA genes. The phylogenetic analysis was conducted based on the complete cp genomes of 17 species and it indicated that A. praecox is closely related to A. coddi in Agapanthaceae family.
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spelling pubmed-85678672021-11-05 The complete chloroplast genome of Agapanthus praecox (Agapanthaceae), an ornamental and medicinal plant Dong, Yan Zhang, Yangyang Zhang, Yan Yue, Jianhua Mitochondrial DNA B Resour Mitogenome Announcement Agapanthus praecox is a monocotyledonous, herbaceous, and perennial plant, which has been used as an ornamental and medicinal plant. Here, we assembled and characterized the complete chloroplast (cp) genome of A. praecox by de novo high throughput sequencing. The results revealed that the cp genome of A. praecox was 157,038 bp in total length, including a large single-copy (LSC) region of 85,195 bp, a small single-copy (SSC) region of 18,113 bp, and two invert repeats (IR) regions of 26,865 bp. The total plastid genome of A. praecox included 132 genes comprising 86 protein-coding genes, 38 tRNA genes, and eight rRNA genes. The phylogenetic analysis was conducted based on the complete cp genomes of 17 species and it indicated that A. praecox is closely related to A. coddi in Agapanthaceae family. Taylor & Francis 2021-11-03 /pmc/articles/PMC8567867/ /pubmed/34746404 http://dx.doi.org/10.1080/23802359.2021.1995516 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Dong, Yan
Zhang, Yangyang
Zhang, Yan
Yue, Jianhua
The complete chloroplast genome of Agapanthus praecox (Agapanthaceae), an ornamental and medicinal plant
title The complete chloroplast genome of Agapanthus praecox (Agapanthaceae), an ornamental and medicinal plant
title_full The complete chloroplast genome of Agapanthus praecox (Agapanthaceae), an ornamental and medicinal plant
title_fullStr The complete chloroplast genome of Agapanthus praecox (Agapanthaceae), an ornamental and medicinal plant
title_full_unstemmed The complete chloroplast genome of Agapanthus praecox (Agapanthaceae), an ornamental and medicinal plant
title_short The complete chloroplast genome of Agapanthus praecox (Agapanthaceae), an ornamental and medicinal plant
title_sort complete chloroplast genome of agapanthus praecox (agapanthaceae), an ornamental and medicinal plant
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8567867/
https://www.ncbi.nlm.nih.gov/pubmed/34746404
http://dx.doi.org/10.1080/23802359.2021.1995516
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