Complete chloroplast genome of Loropetalum chinense var. rubrum and phylogenetic analysis from Baoshan, China

In this study, the complete chloroplast genome of Loropetalum chinense var. rubrum Yieh was sequenced and characterized. The chloroplast genome is 159,427 bp in length, and contains a large single-copy (LSC) region of 88,185 bp and a small single-copy (SSC) region of 18,772 bp separated by a pair of...

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Autores principales: Xiao, Mingkun, Li, Yaqi, Xiong, Xiankun, Shen, Shaobin, Song, Jiming, Liu, Qian, Jiang, Tailing, Luo, Xin, Zhang, Linhui
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Taylor & Francis 2021
Materias:
Mitogenome Announcement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8567920/
https://www.ncbi.nlm.nih.gov/pubmed/34746407
http://dx.doi.org/10.1080/23802359.2021.1969695
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author Xiao, Mingkun
Li, Yaqi
Xiong, Xiankun
Shen, Shaobin
Song, Jiming
Liu, Qian
Jiang, Tailing
Luo, Xin
Zhang, Linhui
author_facet Xiao, Mingkun
Li, Yaqi
Xiong, Xiankun
Shen, Shaobin
Song, Jiming
Liu, Qian
Jiang, Tailing
Luo, Xin
Zhang, Linhui
author_sort Xiao, Mingkun
collection PubMed
description In this study, the complete chloroplast genome of Loropetalum chinense var. rubrum Yieh was sequenced and characterized. The chloroplast genome is 159,427 bp in length, and contains a large single-copy (LSC) region of 88,185 bp and a small single-copy (SSC) region of 18,772 bp separated by a pair of inverted repeat (IR) regions of 26,235 bp. There are 128 genes in the genome including 83 protein-coding, 37 tRNA, and eight rRNA genes. The overall GC is 38.0% and the LSC, SSC, and IR regions are 36.1, 32.7, and 43.1%, respectively. Phylogenetic analysis of L. chinense var. rubrum fully resolved it in a clade with L. subcordatum. This complete chloroplast genome will provide valuable insight into evolution, molecular breeding, and phylogenetic analysis of Loropetalum species.
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spelling pubmed-85679202021-11-05 Complete chloroplast genome of Loropetalum chinense var. rubrum and phylogenetic analysis from Baoshan, China Xiao, Mingkun Li, Yaqi Xiong, Xiankun Shen, Shaobin Song, Jiming Liu, Qian Jiang, Tailing Luo, Xin Zhang, Linhui Mitochondrial DNA B Resour Mitogenome Announcement In this study, the complete chloroplast genome of Loropetalum chinense var. rubrum Yieh was sequenced and characterized. The chloroplast genome is 159,427 bp in length, and contains a large single-copy (LSC) region of 88,185 bp and a small single-copy (SSC) region of 18,772 bp separated by a pair of inverted repeat (IR) regions of 26,235 bp. There are 128 genes in the genome including 83 protein-coding, 37 tRNA, and eight rRNA genes. The overall GC is 38.0% and the LSC, SSC, and IR regions are 36.1, 32.7, and 43.1%, respectively. Phylogenetic analysis of L. chinense var. rubrum fully resolved it in a clade with L. subcordatum. This complete chloroplast genome will provide valuable insight into evolution, molecular breeding, and phylogenetic analysis of Loropetalum species. Taylor & Francis 2021-11-03 /pmc/articles/PMC8567920/ /pubmed/34746407 http://dx.doi.org/10.1080/23802359.2021.1969695 Text en © 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Mitogenome Announcement
Xiao, Mingkun
Li, Yaqi
Xiong, Xiankun
Shen, Shaobin
Song, Jiming
Liu, Qian
Jiang, Tailing
Luo, Xin
Zhang, Linhui
Complete chloroplast genome of Loropetalum chinense var. rubrum and phylogenetic analysis from Baoshan, China
title Complete chloroplast genome of Loropetalum chinense var. rubrum and phylogenetic analysis from Baoshan, China
title_full Complete chloroplast genome of Loropetalum chinense var. rubrum and phylogenetic analysis from Baoshan, China
title_fullStr Complete chloroplast genome of Loropetalum chinense var. rubrum and phylogenetic analysis from Baoshan, China
title_full_unstemmed Complete chloroplast genome of Loropetalum chinense var. rubrum and phylogenetic analysis from Baoshan, China
title_short Complete chloroplast genome of Loropetalum chinense var. rubrum and phylogenetic analysis from Baoshan, China
title_sort complete chloroplast genome of loropetalum chinense var. rubrum and phylogenetic analysis from baoshan, china
topic Mitogenome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8567920/
https://www.ncbi.nlm.nih.gov/pubmed/34746407
http://dx.doi.org/10.1080/23802359.2021.1969695
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