Cargando…

Ferroptosis-Associated Classifier and Indicator for Prognostic Prediction in Cutaneous Melanoma

Ferroptosis plays a critical role in different types of cancers, but the prognostic impact of ferroptosis in cutaneous melanoma remains lacking. Therefore, ferroptosis-related genes (FRGs) were firstly obtained from the FerrDb database and the differentially expressed FRGs were identified by the “li...

Descripción completa

Detalles Bibliográficos
Autores principales: Zeng, Hao, You, Cong, Zhao, Leran, Wang, Jiangyi, Ye, Xiaoying, Yang, Tao, Wan, Chunlei, Deng, Longying
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8568558/
https://www.ncbi.nlm.nih.gov/pubmed/34745259
http://dx.doi.org/10.1155/2021/3658196
_version_ 1784594467281436672
author Zeng, Hao
You, Cong
Zhao, Leran
Wang, Jiangyi
Ye, Xiaoying
Yang, Tao
Wan, Chunlei
Deng, Longying
author_facet Zeng, Hao
You, Cong
Zhao, Leran
Wang, Jiangyi
Ye, Xiaoying
Yang, Tao
Wan, Chunlei
Deng, Longying
author_sort Zeng, Hao
collection PubMed
description Ferroptosis plays a critical role in different types of cancers, but the prognostic impact of ferroptosis in cutaneous melanoma remains lacking. Therefore, ferroptosis-related genes (FRGs) were firstly obtained from the FerrDb database and the differentially expressed FRGs were identified by the “limma” algorithm. Next, the prognostic differentially expressed FRGs were screened out by univariate Cox regression, which were subsequently used to cluster melanomas into two subtypes (clusters A and B). Besides, the Boruta algorithm and principal component analysis (PCA) were performed to build a 15-FRGs indicator, which can robustly predict patients' overall survival (OS) and be considered as an independent prognostic factor in melanoma. The melanoma patients were further divided into high- and low-FRGs score groups. The high score group have a good prognosis, with higher T cell immune infiltrating and lower mutation frequencies in NRAS, KRAS, and NF1. Finally, we discovered that many immune processes and several chemotherapy drugs were closely associated with FRGs score. Thus, our study provides a novel ferroptosis-associated classifier and indicator to predict the prognosis of melanoma. Besides, we identified several potential chemotherapy drugs to induce ferroptosis and could supply additional effective treatments.
format Online
Article
Text
id pubmed-8568558
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Hindawi
record_format MEDLINE/PubMed
spelling pubmed-85685582021-11-05 Ferroptosis-Associated Classifier and Indicator for Prognostic Prediction in Cutaneous Melanoma Zeng, Hao You, Cong Zhao, Leran Wang, Jiangyi Ye, Xiaoying Yang, Tao Wan, Chunlei Deng, Longying J Oncol Review Article Ferroptosis plays a critical role in different types of cancers, but the prognostic impact of ferroptosis in cutaneous melanoma remains lacking. Therefore, ferroptosis-related genes (FRGs) were firstly obtained from the FerrDb database and the differentially expressed FRGs were identified by the “limma” algorithm. Next, the prognostic differentially expressed FRGs were screened out by univariate Cox regression, which were subsequently used to cluster melanomas into two subtypes (clusters A and B). Besides, the Boruta algorithm and principal component analysis (PCA) were performed to build a 15-FRGs indicator, which can robustly predict patients' overall survival (OS) and be considered as an independent prognostic factor in melanoma. The melanoma patients were further divided into high- and low-FRGs score groups. The high score group have a good prognosis, with higher T cell immune infiltrating and lower mutation frequencies in NRAS, KRAS, and NF1. Finally, we discovered that many immune processes and several chemotherapy drugs were closely associated with FRGs score. Thus, our study provides a novel ferroptosis-associated classifier and indicator to predict the prognosis of melanoma. Besides, we identified several potential chemotherapy drugs to induce ferroptosis and could supply additional effective treatments. Hindawi 2021-10-28 /pmc/articles/PMC8568558/ /pubmed/34745259 http://dx.doi.org/10.1155/2021/3658196 Text en Copyright © 2021 Hao Zeng et al. https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Review Article
Zeng, Hao
You, Cong
Zhao, Leran
Wang, Jiangyi
Ye, Xiaoying
Yang, Tao
Wan, Chunlei
Deng, Longying
Ferroptosis-Associated Classifier and Indicator for Prognostic Prediction in Cutaneous Melanoma
title Ferroptosis-Associated Classifier and Indicator for Prognostic Prediction in Cutaneous Melanoma
title_full Ferroptosis-Associated Classifier and Indicator for Prognostic Prediction in Cutaneous Melanoma
title_fullStr Ferroptosis-Associated Classifier and Indicator for Prognostic Prediction in Cutaneous Melanoma
title_full_unstemmed Ferroptosis-Associated Classifier and Indicator for Prognostic Prediction in Cutaneous Melanoma
title_short Ferroptosis-Associated Classifier and Indicator for Prognostic Prediction in Cutaneous Melanoma
title_sort ferroptosis-associated classifier and indicator for prognostic prediction in cutaneous melanoma
topic Review Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8568558/
https://www.ncbi.nlm.nih.gov/pubmed/34745259
http://dx.doi.org/10.1155/2021/3658196
work_keys_str_mv AT zenghao ferroptosisassociatedclassifierandindicatorforprognosticpredictionincutaneousmelanoma
AT youcong ferroptosisassociatedclassifierandindicatorforprognosticpredictionincutaneousmelanoma
AT zhaoleran ferroptosisassociatedclassifierandindicatorforprognosticpredictionincutaneousmelanoma
AT wangjiangyi ferroptosisassociatedclassifierandindicatorforprognosticpredictionincutaneousmelanoma
AT yexiaoying ferroptosisassociatedclassifierandindicatorforprognosticpredictionincutaneousmelanoma
AT yangtao ferroptosisassociatedclassifierandindicatorforprognosticpredictionincutaneousmelanoma
AT wanchunlei ferroptosisassociatedclassifierandindicatorforprognosticpredictionincutaneousmelanoma
AT denglongying ferroptosisassociatedclassifierandindicatorforprognosticpredictionincutaneousmelanoma