Cargando…

Integrative and in-vitro analysis reveal hsa_circ_001787 can act as a diagnostic biomarker for colorectal cancer

BACKGROUND: Circular RNAs (circRNAs) are a new kind of non-coding RNA(ncRNA). Throughout research, we see an increase in the number of studies demonstrating that circRNAs occupy a pivotal role in the growth and advancement of human tumors. Nevertheless, hsa_circ_001787′s role in the evolution of col...

Descripción completa

Detalles Bibliográficos
Autores principales: Chalbatani, Ghanbar Mahmoodi, Gharagouzloo, Elahe, Memari, Fereidoon, Dana, Hassan, Hadloo, Mohammad Hosein Mohammadi, Zainalinia, Neda, Sanati, Mohammad Hossein, Rohollah Miri, Seyed, Mahmoodzadeh, Habibollah
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8568708/
https://www.ncbi.nlm.nih.gov/pubmed/34759742
http://dx.doi.org/10.1016/j.sjbs.2021.06.071
_version_ 1784594490762199040
author Chalbatani, Ghanbar Mahmoodi
Gharagouzloo, Elahe
Memari, Fereidoon
Dana, Hassan
Hadloo, Mohammad Hosein Mohammadi
Zainalinia, Neda
Sanati, Mohammad Hossein
Rohollah Miri, Seyed
Mahmoodzadeh, Habibollah
author_facet Chalbatani, Ghanbar Mahmoodi
Gharagouzloo, Elahe
Memari, Fereidoon
Dana, Hassan
Hadloo, Mohammad Hosein Mohammadi
Zainalinia, Neda
Sanati, Mohammad Hossein
Rohollah Miri, Seyed
Mahmoodzadeh, Habibollah
author_sort Chalbatani, Ghanbar Mahmoodi
collection PubMed
description BACKGROUND: Circular RNAs (circRNAs) are a new kind of non-coding RNA(ncRNA). Throughout research, we see an increase in the number of studies demonstrating that circRNAs occupy a pivotal role in the growth and advancement of human tumors. Nevertheless, hsa_circ_001787′s role in the evolution of colorectal cancer (CRC) remains unclear. This current study ascertained the expression level of circRNA001787 in CRC specimens and neighboring healthy tissues, and investigated the miRNAs associate with hsa_circ_001787, as well as the relationship between hsa_circ_001787 and pathological factors. METHOD: First, the expression level of hsa_circ_001787 was measured in 43 matched Tissues from CRC and normal tissues through using real-time quantitative reverse transcription PCR (qRT-PCR). Second, based on circular RNA-microRNA and microRNA-mRNA pairs, a circRNA-miRNA-mRNA network was created. The survival rate of mRNAs was investigated through the GEPIA in the network. Regarding the elucidated function analysis of hsa_circ_001787, The biological, molecular, cellular function (GO) and pathway (KEGG) enrichment was obtained. RESULT: We detected that hsa_circ_001787 expression level was significantly down expressed in CRC tissue versus paired CRC histological normal tissue. The area under the curve (AUC) was 0.83. The expression level of hsa_circ_001787 was significantly associated with pathological factors such as tumor grade and the primary site of the tumor. Based on the hsa_circ_001787, a novel circRNA/miRNA/mRNA network has been built up, four miRNAs, and 24 mRNA. The pathway of mRNAs analyzed in the pathogenesis of CRC. Four genes distinguished via the GEPIA database were positively linked to the overall survival of CRC patients. CONCLUSION: Our study suggested that hsa_circ_001787 was significantly down-regulated in CRC. We might be able to use this as a new biomarker in the screening of CRC. Furthermore, our finding achieves a broader understanding of the regulatory mechanisms by which hsa_circ_001787 acts as ceRNA in colorectal cancer.
format Online
Article
Text
id pubmed-8568708
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Elsevier
record_format MEDLINE/PubMed
spelling pubmed-85687082021-11-09 Integrative and in-vitro analysis reveal hsa_circ_001787 can act as a diagnostic biomarker for colorectal cancer Chalbatani, Ghanbar Mahmoodi Gharagouzloo, Elahe Memari, Fereidoon Dana, Hassan Hadloo, Mohammad Hosein Mohammadi Zainalinia, Neda Sanati, Mohammad Hossein Rohollah Miri, Seyed Mahmoodzadeh, Habibollah Saudi J Biol Sci Original Article BACKGROUND: Circular RNAs (circRNAs) are a new kind of non-coding RNA(ncRNA). Throughout research, we see an increase in the number of studies demonstrating that circRNAs occupy a pivotal role in the growth and advancement of human tumors. Nevertheless, hsa_circ_001787′s role in the evolution of colorectal cancer (CRC) remains unclear. This current study ascertained the expression level of circRNA001787 in CRC specimens and neighboring healthy tissues, and investigated the miRNAs associate with hsa_circ_001787, as well as the relationship between hsa_circ_001787 and pathological factors. METHOD: First, the expression level of hsa_circ_001787 was measured in 43 matched Tissues from CRC and normal tissues through using real-time quantitative reverse transcription PCR (qRT-PCR). Second, based on circular RNA-microRNA and microRNA-mRNA pairs, a circRNA-miRNA-mRNA network was created. The survival rate of mRNAs was investigated through the GEPIA in the network. Regarding the elucidated function analysis of hsa_circ_001787, The biological, molecular, cellular function (GO) and pathway (KEGG) enrichment was obtained. RESULT: We detected that hsa_circ_001787 expression level was significantly down expressed in CRC tissue versus paired CRC histological normal tissue. The area under the curve (AUC) was 0.83. The expression level of hsa_circ_001787 was significantly associated with pathological factors such as tumor grade and the primary site of the tumor. Based on the hsa_circ_001787, a novel circRNA/miRNA/mRNA network has been built up, four miRNAs, and 24 mRNA. The pathway of mRNAs analyzed in the pathogenesis of CRC. Four genes distinguished via the GEPIA database were positively linked to the overall survival of CRC patients. CONCLUSION: Our study suggested that hsa_circ_001787 was significantly down-regulated in CRC. We might be able to use this as a new biomarker in the screening of CRC. Furthermore, our finding achieves a broader understanding of the regulatory mechanisms by which hsa_circ_001787 acts as ceRNA in colorectal cancer. Elsevier 2021-11 2021-07-01 /pmc/articles/PMC8568708/ /pubmed/34759742 http://dx.doi.org/10.1016/j.sjbs.2021.06.071 Text en © 2021 The Authors. Published by Elsevier B.V. on behalf of King Saud University. https://creativecommons.org/licenses/by-nc-nd/4.0/This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Original Article
Chalbatani, Ghanbar Mahmoodi
Gharagouzloo, Elahe
Memari, Fereidoon
Dana, Hassan
Hadloo, Mohammad Hosein Mohammadi
Zainalinia, Neda
Sanati, Mohammad Hossein
Rohollah Miri, Seyed
Mahmoodzadeh, Habibollah
Integrative and in-vitro analysis reveal hsa_circ_001787 can act as a diagnostic biomarker for colorectal cancer
title Integrative and in-vitro analysis reveal hsa_circ_001787 can act as a diagnostic biomarker for colorectal cancer
title_full Integrative and in-vitro analysis reveal hsa_circ_001787 can act as a diagnostic biomarker for colorectal cancer
title_fullStr Integrative and in-vitro analysis reveal hsa_circ_001787 can act as a diagnostic biomarker for colorectal cancer
title_full_unstemmed Integrative and in-vitro analysis reveal hsa_circ_001787 can act as a diagnostic biomarker for colorectal cancer
title_short Integrative and in-vitro analysis reveal hsa_circ_001787 can act as a diagnostic biomarker for colorectal cancer
title_sort integrative and in-vitro analysis reveal hsa_circ_001787 can act as a diagnostic biomarker for colorectal cancer
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8568708/
https://www.ncbi.nlm.nih.gov/pubmed/34759742
http://dx.doi.org/10.1016/j.sjbs.2021.06.071
work_keys_str_mv AT chalbatanighanbarmahmoodi integrativeandinvitroanalysisrevealhsacirc001787canactasadiagnosticbiomarkerforcolorectalcancer
AT gharagouzlooelahe integrativeandinvitroanalysisrevealhsacirc001787canactasadiagnosticbiomarkerforcolorectalcancer
AT memarifereidoon integrativeandinvitroanalysisrevealhsacirc001787canactasadiagnosticbiomarkerforcolorectalcancer
AT danahassan integrativeandinvitroanalysisrevealhsacirc001787canactasadiagnosticbiomarkerforcolorectalcancer
AT hadloomohammadhoseinmohammadi integrativeandinvitroanalysisrevealhsacirc001787canactasadiagnosticbiomarkerforcolorectalcancer
AT zainalinianeda integrativeandinvitroanalysisrevealhsacirc001787canactasadiagnosticbiomarkerforcolorectalcancer
AT sanatimohammadhossein integrativeandinvitroanalysisrevealhsacirc001787canactasadiagnosticbiomarkerforcolorectalcancer
AT rohollahmiriseyed integrativeandinvitroanalysisrevealhsacirc001787canactasadiagnosticbiomarkerforcolorectalcancer
AT mahmoodzadehhabibollah integrativeandinvitroanalysisrevealhsacirc001787canactasadiagnosticbiomarkerforcolorectalcancer