Cargando…

An Analysis of Image Features Extracted by CNNs to Design Classification Models for COVID-19 and Non-COVID-19

The SARS-CoV-2 virus causes a respiratory disease in humans, known as COVID-19. The confirmatory diagnostic of this disease occurs through the real-time reverse transcription and polymerase chain reaction test (RT-qPCR). However, the period of obtaining the results limits the application of the mass...

Descripción completa

Detalles Bibliográficos
Autores principales: Teodoro, Arthur A. M., Silva, Douglas H., Saadi, Muhammad, Okey, Ogobuchi D., Rosa, Renata L., Otaibi, Sattam Al, Rodríguez, Demóstenes Z.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8572648/
https://www.ncbi.nlm.nih.gov/pubmed/34777680
http://dx.doi.org/10.1007/s11265-021-01714-7
_version_ 1784595258170933248
author Teodoro, Arthur A. M.
Silva, Douglas H.
Saadi, Muhammad
Okey, Ogobuchi D.
Rosa, Renata L.
Otaibi, Sattam Al
Rodríguez, Demóstenes Z.
author_facet Teodoro, Arthur A. M.
Silva, Douglas H.
Saadi, Muhammad
Okey, Ogobuchi D.
Rosa, Renata L.
Otaibi, Sattam Al
Rodríguez, Demóstenes Z.
author_sort Teodoro, Arthur A. M.
collection PubMed
description The SARS-CoV-2 virus causes a respiratory disease in humans, known as COVID-19. The confirmatory diagnostic of this disease occurs through the real-time reverse transcription and polymerase chain reaction test (RT-qPCR). However, the period of obtaining the results limits the application of the mass test. Thus, chest X-ray computed tomography (CT) images are analyzed to help diagnose the disease. However, during an outbreak of a disease that causes respiratory problems, radiologists may be overwhelmed with analyzing medical images. In the literature, some studies used feature extraction techniques based on CNNs, with classification models to identify COVID-19 and non-COVID-19. This work compare the performance of applying pre-trained CNNs in conjunction with classification methods based on machine learning algorithms. The main objective is to analyze the impact of the features extracted by CNNs, in the construction of models to classify COVID-19 and non-COVID-19. A SARS-CoV-2 CT data-set is used in experimental tests. The CNNs implemented are visual geometry group (VGG-16 and VGG-19), inception V3 (IV3), and EfficientNet-B0 (EB0). The classification methods were k-nearest neighbor (KNN), support vector machine (SVM), and explainable deep neural networks (xDNN). In the experiments, the best results were obtained by the EfficientNet model used to extract data and the SVM with an RBF kernel. This approach achieved an average performance of 0.9856 in the precision macro, 0.9853 in the sensitivity macro, 0.9853 in the specificity macro, and 0.9853 in the F1 score macro.
format Online
Article
Text
id pubmed-8572648
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Springer US
record_format MEDLINE/PubMed
spelling pubmed-85726482021-11-08 An Analysis of Image Features Extracted by CNNs to Design Classification Models for COVID-19 and Non-COVID-19 Teodoro, Arthur A. M. Silva, Douglas H. Saadi, Muhammad Okey, Ogobuchi D. Rosa, Renata L. Otaibi, Sattam Al Rodríguez, Demóstenes Z. J Signal Process Syst Article The SARS-CoV-2 virus causes a respiratory disease in humans, known as COVID-19. The confirmatory diagnostic of this disease occurs through the real-time reverse transcription and polymerase chain reaction test (RT-qPCR). However, the period of obtaining the results limits the application of the mass test. Thus, chest X-ray computed tomography (CT) images are analyzed to help diagnose the disease. However, during an outbreak of a disease that causes respiratory problems, radiologists may be overwhelmed with analyzing medical images. In the literature, some studies used feature extraction techniques based on CNNs, with classification models to identify COVID-19 and non-COVID-19. This work compare the performance of applying pre-trained CNNs in conjunction with classification methods based on machine learning algorithms. The main objective is to analyze the impact of the features extracted by CNNs, in the construction of models to classify COVID-19 and non-COVID-19. A SARS-CoV-2 CT data-set is used in experimental tests. The CNNs implemented are visual geometry group (VGG-16 and VGG-19), inception V3 (IV3), and EfficientNet-B0 (EB0). The classification methods were k-nearest neighbor (KNN), support vector machine (SVM), and explainable deep neural networks (xDNN). In the experiments, the best results were obtained by the EfficientNet model used to extract data and the SVM with an RBF kernel. This approach achieved an average performance of 0.9856 in the precision macro, 0.9853 in the sensitivity macro, 0.9853 in the specificity macro, and 0.9853 in the F1 score macro. Springer US 2021-11-08 2023 /pmc/articles/PMC8572648/ /pubmed/34777680 http://dx.doi.org/10.1007/s11265-021-01714-7 Text en © The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature 2021 This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Article
Teodoro, Arthur A. M.
Silva, Douglas H.
Saadi, Muhammad
Okey, Ogobuchi D.
Rosa, Renata L.
Otaibi, Sattam Al
Rodríguez, Demóstenes Z.
An Analysis of Image Features Extracted by CNNs to Design Classification Models for COVID-19 and Non-COVID-19
title An Analysis of Image Features Extracted by CNNs to Design Classification Models for COVID-19 and Non-COVID-19
title_full An Analysis of Image Features Extracted by CNNs to Design Classification Models for COVID-19 and Non-COVID-19
title_fullStr An Analysis of Image Features Extracted by CNNs to Design Classification Models for COVID-19 and Non-COVID-19
title_full_unstemmed An Analysis of Image Features Extracted by CNNs to Design Classification Models for COVID-19 and Non-COVID-19
title_short An Analysis of Image Features Extracted by CNNs to Design Classification Models for COVID-19 and Non-COVID-19
title_sort analysis of image features extracted by cnns to design classification models for covid-19 and non-covid-19
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8572648/
https://www.ncbi.nlm.nih.gov/pubmed/34777680
http://dx.doi.org/10.1007/s11265-021-01714-7
work_keys_str_mv AT teodoroarthuram ananalysisofimagefeaturesextractedbycnnstodesignclassificationmodelsforcovid19andnoncovid19
AT silvadouglash ananalysisofimagefeaturesextractedbycnnstodesignclassificationmodelsforcovid19andnoncovid19
AT saadimuhammad ananalysisofimagefeaturesextractedbycnnstodesignclassificationmodelsforcovid19andnoncovid19
AT okeyogobuchid ananalysisofimagefeaturesextractedbycnnstodesignclassificationmodelsforcovid19andnoncovid19
AT rosarenatal ananalysisofimagefeaturesextractedbycnnstodesignclassificationmodelsforcovid19andnoncovid19
AT otaibisattamal ananalysisofimagefeaturesextractedbycnnstodesignclassificationmodelsforcovid19andnoncovid19
AT rodriguezdemostenesz ananalysisofimagefeaturesextractedbycnnstodesignclassificationmodelsforcovid19andnoncovid19
AT teodoroarthuram analysisofimagefeaturesextractedbycnnstodesignclassificationmodelsforcovid19andnoncovid19
AT silvadouglash analysisofimagefeaturesextractedbycnnstodesignclassificationmodelsforcovid19andnoncovid19
AT saadimuhammad analysisofimagefeaturesextractedbycnnstodesignclassificationmodelsforcovid19andnoncovid19
AT okeyogobuchid analysisofimagefeaturesextractedbycnnstodesignclassificationmodelsforcovid19andnoncovid19
AT rosarenatal analysisofimagefeaturesextractedbycnnstodesignclassificationmodelsforcovid19andnoncovid19
AT otaibisattamal analysisofimagefeaturesextractedbycnnstodesignclassificationmodelsforcovid19andnoncovid19
AT rodriguezdemostenesz analysisofimagefeaturesextractedbycnnstodesignclassificationmodelsforcovid19andnoncovid19