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Fast Posterior Estimation of Cardiac Electrophysiological Model Parameters via Bayesian Active Learning
Probabilistic estimation of cardiac electrophysiological model parameters serves an important step toward model personalization and uncertain quantification. The expensive computation associated with these model simulations, however, makes direct Markov Chain Monte Carlo (MCMC) sampling of the poste...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8573318/ https://www.ncbi.nlm.nih.gov/pubmed/34759835 http://dx.doi.org/10.3389/fphys.2021.740306 |
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author | Zaman, Md Shakil Dhamala, Jwala Bajracharya, Pradeep Sapp, John L. Horácek, B. Milan Wu, Katherine C. Trayanova, Natalia A. Wang, Linwei |
author_facet | Zaman, Md Shakil Dhamala, Jwala Bajracharya, Pradeep Sapp, John L. Horácek, B. Milan Wu, Katherine C. Trayanova, Natalia A. Wang, Linwei |
author_sort | Zaman, Md Shakil |
collection | PubMed |
description | Probabilistic estimation of cardiac electrophysiological model parameters serves an important step toward model personalization and uncertain quantification. The expensive computation associated with these model simulations, however, makes direct Markov Chain Monte Carlo (MCMC) sampling of the posterior probability density function (pdf) of model parameters computationally intensive. Approximated posterior pdfs resulting from replacing the simulation model with a computationally efficient surrogate, on the other hand, have seen limited accuracy. In this study, we present a Bayesian active learning method to directly approximate the posterior pdf function of cardiac model parameters, in which we intelligently select training points to query the simulation model in order to learn the posterior pdf using a small number of samples. We integrate a generative model into Bayesian active learning to allow approximating posterior pdf of high-dimensional model parameters at the resolution of the cardiac mesh. We further introduce new acquisition functions to focus the selection of training points on better approximating the shape rather than the modes of the posterior pdf of interest. We evaluated the presented method in estimating tissue excitability in a 3D cardiac electrophysiological model in a range of synthetic and real-data experiments. We demonstrated its improved accuracy in approximating the posterior pdf compared to Bayesian active learning using regular acquisition functions, and substantially reduced computational cost in comparison to existing standard or accelerated MCMC sampling. |
format | Online Article Text |
id | pubmed-8573318 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-85733182021-11-09 Fast Posterior Estimation of Cardiac Electrophysiological Model Parameters via Bayesian Active Learning Zaman, Md Shakil Dhamala, Jwala Bajracharya, Pradeep Sapp, John L. Horácek, B. Milan Wu, Katherine C. Trayanova, Natalia A. Wang, Linwei Front Physiol Physiology Probabilistic estimation of cardiac electrophysiological model parameters serves an important step toward model personalization and uncertain quantification. The expensive computation associated with these model simulations, however, makes direct Markov Chain Monte Carlo (MCMC) sampling of the posterior probability density function (pdf) of model parameters computationally intensive. Approximated posterior pdfs resulting from replacing the simulation model with a computationally efficient surrogate, on the other hand, have seen limited accuracy. In this study, we present a Bayesian active learning method to directly approximate the posterior pdf function of cardiac model parameters, in which we intelligently select training points to query the simulation model in order to learn the posterior pdf using a small number of samples. We integrate a generative model into Bayesian active learning to allow approximating posterior pdf of high-dimensional model parameters at the resolution of the cardiac mesh. We further introduce new acquisition functions to focus the selection of training points on better approximating the shape rather than the modes of the posterior pdf of interest. We evaluated the presented method in estimating tissue excitability in a 3D cardiac electrophysiological model in a range of synthetic and real-data experiments. We demonstrated its improved accuracy in approximating the posterior pdf compared to Bayesian active learning using regular acquisition functions, and substantially reduced computational cost in comparison to existing standard or accelerated MCMC sampling. Frontiers Media S.A. 2021-10-25 /pmc/articles/PMC8573318/ /pubmed/34759835 http://dx.doi.org/10.3389/fphys.2021.740306 Text en Copyright © 2021 Zaman, Dhamala, Bajracharya, Sapp, Horácek, Wu, Trayanova and Wang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Physiology Zaman, Md Shakil Dhamala, Jwala Bajracharya, Pradeep Sapp, John L. Horácek, B. Milan Wu, Katherine C. Trayanova, Natalia A. Wang, Linwei Fast Posterior Estimation of Cardiac Electrophysiological Model Parameters via Bayesian Active Learning |
title | Fast Posterior Estimation of Cardiac Electrophysiological Model Parameters via Bayesian Active Learning |
title_full | Fast Posterior Estimation of Cardiac Electrophysiological Model Parameters via Bayesian Active Learning |
title_fullStr | Fast Posterior Estimation of Cardiac Electrophysiological Model Parameters via Bayesian Active Learning |
title_full_unstemmed | Fast Posterior Estimation of Cardiac Electrophysiological Model Parameters via Bayesian Active Learning |
title_short | Fast Posterior Estimation of Cardiac Electrophysiological Model Parameters via Bayesian Active Learning |
title_sort | fast posterior estimation of cardiac electrophysiological model parameters via bayesian active learning |
topic | Physiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8573318/ https://www.ncbi.nlm.nih.gov/pubmed/34759835 http://dx.doi.org/10.3389/fphys.2021.740306 |
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