Cargando…

Comparative Fungal Community Analyses Using Metatranscriptomics and Internal Transcribed Spacer Amplicon Sequencing from Norway Spruce

The health, growth, and fitness of boreal forest trees are impacted and improved by their associated microbiomes. Microbial gene expression and functional activity can be assayed with RNA sequencing (RNA-Seq) data from host samples. In contrast, phylogenetic marker gene amplicon sequencing data are...

Descripción completa

Detalles Bibliográficos
Autores principales:	Schneider, Andreas N., Sundh, John, Sundström, Görel, Richau, Kerstin, Delhomme, Nicolas, Grabherr, Manfred, Hurry, Vaughan, Street, Nathaniel R.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	American Society for Microbiology 2021
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8573963/ https://www.ncbi.nlm.nih.gov/pubmed/33594001 http://dx.doi.org/10.1128/mSystems.00884-20

Ejemplares similares

Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies)
por: Delhomme, Nicolas, et al.
Publicado: (2015)

Metatranscriptomics captures dynamic shifts in mycorrhizal coordination in boreal forests
por: Law, Simon R., et al.
Publicado: (2022)

Candidate regulators and target genes of drought stress in needles and roots of Norway spruce
por: Haas, Julia C, et al.
Publicado: (2021)

CloVR-ITS: Automated internal transcribed spacer amplicon sequence analysis pipeline for the characterization of fungal microbiota
por: White, James Robert, et al.
Publicado: (2013)

The Mitogenome of Norway Spruce and a Reappraisal of Mitochondrial Recombination in Plants
por: Sullivan, Alexis R, et al.
Publicado: (2019)

Transcriptome analysis of embryonic domains in Norway spruce reveals potential regulators of suspensor cell death
por: Reza, Salim H., et al.
Publicado: (2018)

Customization of a DADA2-based pipeline for fungal internal transcribed spacer 1 (ITS1) amplicon data sets
por: Rolling, Thierry, et al.
Publicado: (2022)

Metataxonomics of Internal Transcribed Spacer amplicons in cerebrospinal fluid for diagnosing and genotyping of cryptococcal meningitis
por: Zhu, Ji-Ting, et al.
Publicado: (2019)

Identification of the Fungal Community in Otomycosis by Internal Transcribed Spacer Sequencing
por: Gu, Xiaona, et al.
Publicado: (2022)

Internal Transcribed Spacer and 16S Amplicon Sequencing Identifies Microbial Species Associated with Asbestos in New Zealand
por: Doyle, Erin, et al.
Publicado: (2023)

Cone‐setting in spruce is regulated by conserved elements of the age‐dependent flowering pathway
por: Akhter, Shirin, et al.
Publicado: (2022)

Employing 454 amplicon pyrosequencing to reveal intragenomic divergence in the internal transcribed spacer rDNA region in fungi
por: Lindner, Daniel L, et al.
Publicado: (2013)

Genotypic variation in Norway spruce correlates to fungal communities in vegetative buds
por: Elfstrand, Malin, et al.
Publicado: (2019)

Amplicons, Metagenomes, and Metatranscriptomes from Sediment and Water
por: Newman, Madison R., et al.
Publicado: (2023)

Molecular Analysis of Fungal Populations in Patients with Oral Candidiasis Using Internal Transcribed Spacer Region
por: Ieda, Shinsuke, et al.
Publicado: (2014)

Metatranscriptomics and Amplicon Sequencing Reveal Mutualisms in Seagrass Microbiomes
por: Crump, Byron C., et al.
Publicado: (2018)

A single test approach for accurate and sensitive detection and taxonomic characterization of Trypanosomes by comprehensive analysis of internal transcribed spacer 1 amplicons
por: Gaithuma, Alex Kiarie, et al.
Publicado: (2019)

Microbiomes of Field-Grown Maize and Soybean in Southeastern and Central Brazil Inferred by High-Throughput 16S and Internal Transcribed Spacer Amplicon Sequencing
por: Rossmann, Maike, et al.
Publicado: (2021)

Phylogenetic reconstruction of endophytic fungal isolates using internal transcribed spacer 2 (ITS2) region
por: GokulRaj, Kathamuthu, et al.
Publicado: (2014)

Correction: Molecular Analysis of Fungal Populations in Patients with Oral Candidiasis Using Internal Transcribed Spacer Region
Publicado: (2014)

PIPITS: an automated pipeline for analyses of fungal internal transcribed spacer sequences from the Illumina sequencing platform
por: Gweon, Hyun S., et al.
Publicado: (2015)

Belowground fungal community diversity and composition associated with Norway spruce along an altitudinal gradient
por: Schön, Max E., et al.
Publicado: (2018)

Analysis of Mammalian rDNA Internal Transcribed Spacers
por: Coleman, Annette W.
Publicado: (2013)

Norway spruce postglacial recolonization of Fennoscandia
por: Nota, Kevin, et al.
Publicado: (2022)

Modular and configurable optimal sequence alignment software: Cola
por: Zamani, Neda, et al.
Publicado: (2014)

Metagenomic data of fungal internal transcribed spacer from serofluid dish, a traditional Chinese fermented food
por: Chen, Peng, et al.
Publicado: (2015)

Loss of diversity in wood-inhabiting fungal communities affects decomposition activity in Norway spruce wood
por: Valentín, Lara, et al.
Publicado: (2014)

Fungal communities and their association with nitrogen-fixing bacteria affect early decomposition of Norway spruce deadwood
por: Gómez-Brandón, María, et al.
Publicado: (2020)

Rhizospheric Microbiome Profiling of Capsicum annuum L. Cultivated in Amended Soils by 16S and Internal Transcribed Spacer 2 rRNA Amplicon Metagenome Sequencing
por: Asaff-Torres, Ali, et al.
Publicado: (2017)

Large-Scale Characterization of the Soil Microbiome in Ancient Tea Plantations Using High-Throughput 16S rRNA and Internal Transcribed Spacer Amplicon Sequencing
por: Kui, Ling, et al.
Publicado: (2021)

An Ultra-Dense Haploid Genetic Map for Evaluating the Highly Fragmented Genome Assembly of Norway Spruce (Picea abies)
por: Bernhardsson, Carolina, et al.
Publicado: (2019)

Non-radioactive in situ Hybridization Protocol Applicable for Norway Spruce and a Range of Plant Species
por: Karlgren, Anna, et al.
Publicado: (2009)

Extensive intragenomic variation in the internal transcribed spacer region of fungi
por: Bradshaw, Michael J., et al.
Publicado: (2023)

Ozone detoxification of steam-pretreated Norway spruce
por: Cavka, Adnan, et al.
Publicado: (2015)

Diagnostic information Profiling and Evaluation of Causative Fungi of Fungal Keratitis Using High-throughput Internal Transcribed Spacer Sequencing
por: Ren, Zhichao, et al.
Publicado: (2020)

ACES: a machine learning toolbox for clustering analysis and visualization
por: Gao, Jiangning, et al.
Publicado: (2018)

Comparison of Internal Transcribed Spacers and Intergenic Spacer Regions of Five Common Iranian Sheep Bursate Nematodes
por: NABAVI, Reza, et al.
Publicado: (2014)

Interactions between soil- and dead wood-inhabiting fungal communities during the decay of Norway spruce logs
por: Mäkipää, Raisa, et al.
Publicado: (2017)

Interactions among Norway spruce, the bark beetle Ips typographus and its fungal symbionts in times of drought
por: Netherer, Sigrid, et al.
Publicado: (2021)

Sequence Analysis of the Internal Transcribed Spacer of Ribosomal DNA in the Genus Rhizopus
por: Park, You-Jung, et al.
Publicado: (2005)

Cannot write session to /tmp/vufind_sessions/sess_vn9u99gahck3mvg92ltifoomru