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Updates to HCOP: the HGNC comparison of orthology predictions tool

Multiple resources currently exist that predict orthologous relationships between genes. These resources differ both in the methodologies used and in the species they make predictions for. The HGNC Comparison of Orthology Predictions (HCOP) search tool integrates and displays data from multiple orth...

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Detalles Bibliográficos
Autores principales: Yates, Bethan, Gray, Kristian A, Jones, Tamsin E M, Bruford, Elspeth A
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8574622/
https://www.ncbi.nlm.nih.gov/pubmed/33959747
http://dx.doi.org/10.1093/bib/bbab155
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author Yates, Bethan
Gray, Kristian A
Jones, Tamsin E M
Bruford, Elspeth A
author_facet Yates, Bethan
Gray, Kristian A
Jones, Tamsin E M
Bruford, Elspeth A
author_sort Yates, Bethan
collection PubMed
description Multiple resources currently exist that predict orthologous relationships between genes. These resources differ both in the methodologies used and in the species they make predictions for. The HGNC Comparison of Orthology Predictions (HCOP) search tool integrates and displays data from multiple ortholog prediction resources for a specified human gene or set of genes. An indication of the reliability of a prediction is provided by the number of resources that support it. HCOP was originally designed to show orthology predictions between human and mouse but has been expanded to include data from a current total of 20 selected vertebrate and model organism species. The HCOP pipeline used to fetch and integrate the information from the disparate ortholog and nomenclature data resources has recently been rewritten, both to enable the inclusion of new data and to take advantage of modern web technologies. Data from HCOP are used extensively in our work naming genes as the Vertebrate Gene Nomenclature Committee (https://vertebrate.genenames.org).
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spelling pubmed-85746222021-11-09 Updates to HCOP: the HGNC comparison of orthology predictions tool Yates, Bethan Gray, Kristian A Jones, Tamsin E M Bruford, Elspeth A Brief Bioinform Problem Solving Protocol Multiple resources currently exist that predict orthologous relationships between genes. These resources differ both in the methodologies used and in the species they make predictions for. The HGNC Comparison of Orthology Predictions (HCOP) search tool integrates and displays data from multiple ortholog prediction resources for a specified human gene or set of genes. An indication of the reliability of a prediction is provided by the number of resources that support it. HCOP was originally designed to show orthology predictions between human and mouse but has been expanded to include data from a current total of 20 selected vertebrate and model organism species. The HCOP pipeline used to fetch and integrate the information from the disparate ortholog and nomenclature data resources has recently been rewritten, both to enable the inclusion of new data and to take advantage of modern web technologies. Data from HCOP are used extensively in our work naming genes as the Vertebrate Gene Nomenclature Committee (https://vertebrate.genenames.org). Oxford University Press 2021-05-06 /pmc/articles/PMC8574622/ /pubmed/33959747 http://dx.doi.org/10.1093/bib/bbab155 Text en © The Author(s) 2021. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Problem Solving Protocol
Yates, Bethan
Gray, Kristian A
Jones, Tamsin E M
Bruford, Elspeth A
Updates to HCOP: the HGNC comparison of orthology predictions tool
title Updates to HCOP: the HGNC comparison of orthology predictions tool
title_full Updates to HCOP: the HGNC comparison of orthology predictions tool
title_fullStr Updates to HCOP: the HGNC comparison of orthology predictions tool
title_full_unstemmed Updates to HCOP: the HGNC comparison of orthology predictions tool
title_short Updates to HCOP: the HGNC comparison of orthology predictions tool
title_sort updates to hcop: the hgnc comparison of orthology predictions tool
topic Problem Solving Protocol
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8574622/
https://www.ncbi.nlm.nih.gov/pubmed/33959747
http://dx.doi.org/10.1093/bib/bbab155
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