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Updates to HCOP: the HGNC comparison of orthology predictions tool
Multiple resources currently exist that predict orthologous relationships between genes. These resources differ both in the methodologies used and in the species they make predictions for. The HGNC Comparison of Orthology Predictions (HCOP) search tool integrates and displays data from multiple orth...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8574622/ https://www.ncbi.nlm.nih.gov/pubmed/33959747 http://dx.doi.org/10.1093/bib/bbab155 |
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author | Yates, Bethan Gray, Kristian A Jones, Tamsin E M Bruford, Elspeth A |
author_facet | Yates, Bethan Gray, Kristian A Jones, Tamsin E M Bruford, Elspeth A |
author_sort | Yates, Bethan |
collection | PubMed |
description | Multiple resources currently exist that predict orthologous relationships between genes. These resources differ both in the methodologies used and in the species they make predictions for. The HGNC Comparison of Orthology Predictions (HCOP) search tool integrates and displays data from multiple ortholog prediction resources for a specified human gene or set of genes. An indication of the reliability of a prediction is provided by the number of resources that support it. HCOP was originally designed to show orthology predictions between human and mouse but has been expanded to include data from a current total of 20 selected vertebrate and model organism species. The HCOP pipeline used to fetch and integrate the information from the disparate ortholog and nomenclature data resources has recently been rewritten, both to enable the inclusion of new data and to take advantage of modern web technologies. Data from HCOP are used extensively in our work naming genes as the Vertebrate Gene Nomenclature Committee (https://vertebrate.genenames.org). |
format | Online Article Text |
id | pubmed-8574622 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-85746222021-11-09 Updates to HCOP: the HGNC comparison of orthology predictions tool Yates, Bethan Gray, Kristian A Jones, Tamsin E M Bruford, Elspeth A Brief Bioinform Problem Solving Protocol Multiple resources currently exist that predict orthologous relationships between genes. These resources differ both in the methodologies used and in the species they make predictions for. The HGNC Comparison of Orthology Predictions (HCOP) search tool integrates and displays data from multiple ortholog prediction resources for a specified human gene or set of genes. An indication of the reliability of a prediction is provided by the number of resources that support it. HCOP was originally designed to show orthology predictions between human and mouse but has been expanded to include data from a current total of 20 selected vertebrate and model organism species. The HCOP pipeline used to fetch and integrate the information from the disparate ortholog and nomenclature data resources has recently been rewritten, both to enable the inclusion of new data and to take advantage of modern web technologies. Data from HCOP are used extensively in our work naming genes as the Vertebrate Gene Nomenclature Committee (https://vertebrate.genenames.org). Oxford University Press 2021-05-06 /pmc/articles/PMC8574622/ /pubmed/33959747 http://dx.doi.org/10.1093/bib/bbab155 Text en © The Author(s) 2021. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Problem Solving Protocol Yates, Bethan Gray, Kristian A Jones, Tamsin E M Bruford, Elspeth A Updates to HCOP: the HGNC comparison of orthology predictions tool |
title | Updates to HCOP: the HGNC comparison of orthology predictions tool |
title_full | Updates to HCOP: the HGNC comparison of orthology predictions tool |
title_fullStr | Updates to HCOP: the HGNC comparison of orthology predictions tool |
title_full_unstemmed | Updates to HCOP: the HGNC comparison of orthology predictions tool |
title_short | Updates to HCOP: the HGNC comparison of orthology predictions tool |
title_sort | updates to hcop: the hgnc comparison of orthology predictions tool |
topic | Problem Solving Protocol |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8574622/ https://www.ncbi.nlm.nih.gov/pubmed/33959747 http://dx.doi.org/10.1093/bib/bbab155 |
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