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Temporal SNR optimization through RF coil combination in fMRI: The more, the better?
For functional MRI with a multi-channel receiver RF coil, images are often reconstructed channel by channel, resulting into multiple images per time frame. The final image to analyze usually is the result of the covariance Sum-of-Squares (covSoS) combination across these channels. Although this reco...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2021
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8575292/ https://www.ncbi.nlm.nih.gov/pubmed/34748584 http://dx.doi.org/10.1371/journal.pone.0259592 |
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author | Jamil, Redouane Mauconduit, Franck Le Ster, Caroline Ehses, Philipp Poser, Benedikt A. Vignaud, Alexandre Boulant, Nicolas |
author_facet | Jamil, Redouane Mauconduit, Franck Le Ster, Caroline Ehses, Philipp Poser, Benedikt A. Vignaud, Alexandre Boulant, Nicolas |
author_sort | Jamil, Redouane |
collection | PubMed |
description | For functional MRI with a multi-channel receiver RF coil, images are often reconstructed channel by channel, resulting into multiple images per time frame. The final image to analyze usually is the result of the covariance Sum-of-Squares (covSoS) combination across these channels. Although this reconstruction is quasi-optimal in SNR, it is not necessarily the case in terms of temporal SNR (tSNR) of the time series, which is yet a more relevant metric for fMRI data quality. In this work, we investigated tSNR optimality through voxel-wise RF coil combination and its effects on BOLD sensitivity. An analytical solution for an optimal RF coil combination is described, which is somewhat tied to the extended Krueger-Glover model involving both thermal and physiological noise covariance matrices. Compared experimentally to covSOS on four volunteers at 7T, the method yielded great improvement of tSNR but, surprisingly, did not result into higher BOLD sensitivity. Solutions to improve the method such as for example the t-score for the mean recently proposed are also explored, but result into similar observations once the statistics are corrected properly. Overall, the work shows that data-driven RF coil combinations based on tSNR considerations alone should be avoided unless additional and unbiased assumptions can be made. |
format | Online Article Text |
id | pubmed-8575292 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2021 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-85752922021-11-09 Temporal SNR optimization through RF coil combination in fMRI: The more, the better? Jamil, Redouane Mauconduit, Franck Le Ster, Caroline Ehses, Philipp Poser, Benedikt A. Vignaud, Alexandre Boulant, Nicolas PLoS One Research Article For functional MRI with a multi-channel receiver RF coil, images are often reconstructed channel by channel, resulting into multiple images per time frame. The final image to analyze usually is the result of the covariance Sum-of-Squares (covSoS) combination across these channels. Although this reconstruction is quasi-optimal in SNR, it is not necessarily the case in terms of temporal SNR (tSNR) of the time series, which is yet a more relevant metric for fMRI data quality. In this work, we investigated tSNR optimality through voxel-wise RF coil combination and its effects on BOLD sensitivity. An analytical solution for an optimal RF coil combination is described, which is somewhat tied to the extended Krueger-Glover model involving both thermal and physiological noise covariance matrices. Compared experimentally to covSOS on four volunteers at 7T, the method yielded great improvement of tSNR but, surprisingly, did not result into higher BOLD sensitivity. Solutions to improve the method such as for example the t-score for the mean recently proposed are also explored, but result into similar observations once the statistics are corrected properly. Overall, the work shows that data-driven RF coil combinations based on tSNR considerations alone should be avoided unless additional and unbiased assumptions can be made. Public Library of Science 2021-11-08 /pmc/articles/PMC8575292/ /pubmed/34748584 http://dx.doi.org/10.1371/journal.pone.0259592 Text en © 2021 Jamil et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Jamil, Redouane Mauconduit, Franck Le Ster, Caroline Ehses, Philipp Poser, Benedikt A. Vignaud, Alexandre Boulant, Nicolas Temporal SNR optimization through RF coil combination in fMRI: The more, the better? |
title | Temporal SNR optimization through RF coil combination in fMRI: The more, the better? |
title_full | Temporal SNR optimization through RF coil combination in fMRI: The more, the better? |
title_fullStr | Temporal SNR optimization through RF coil combination in fMRI: The more, the better? |
title_full_unstemmed | Temporal SNR optimization through RF coil combination in fMRI: The more, the better? |
title_short | Temporal SNR optimization through RF coil combination in fMRI: The more, the better? |
title_sort | temporal snr optimization through rf coil combination in fmri: the more, the better? |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8575292/ https://www.ncbi.nlm.nih.gov/pubmed/34748584 http://dx.doi.org/10.1371/journal.pone.0259592 |
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