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Spatiotemporal prediction of COVID-19 cases using inter- and intra-county proxies of human interactions

Measurements of human interaction through proxies such as social connectedness or movement patterns have proved useful for predictive modeling of COVID-19, which is a challenging task, especially at high spatial resolutions. In this study, we develop a Spatiotemporal autoregressive model to predict...

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Autores principales: Vahedi, Behzad, Karimzadeh, Morteza, Zoraghein, Hamidreza
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8576047/
https://www.ncbi.nlm.nih.gov/pubmed/34750353
http://dx.doi.org/10.1038/s41467-021-26742-6
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author Vahedi, Behzad
Karimzadeh, Morteza
Zoraghein, Hamidreza
author_facet Vahedi, Behzad
Karimzadeh, Morteza
Zoraghein, Hamidreza
author_sort Vahedi, Behzad
collection PubMed
description Measurements of human interaction through proxies such as social connectedness or movement patterns have proved useful for predictive modeling of COVID-19, which is a challenging task, especially at high spatial resolutions. In this study, we develop a Spatiotemporal autoregressive model to predict county-level new cases of COVID-19 in the coterminous US using spatiotemporal lags of infection rates, human interactions, human mobility, and socioeconomic composition of counties as predictive features. We capture human interactions through 1) Facebook- and 2) cell phone-derived measures of connectivity and human mobility, and use them in two separate models for predicting county-level new cases of COVID-19. We evaluate the model on 14 forecast dates between 2020/10/25 and 2021/01/24 over one- to four-week prediction horizons. Comparing our predictions with a Baseline model developed by the COVID-19 Forecast Hub indicates an average 6.46% improvement in prediction Mean Absolute Errors (MAE) over the two-week prediction horizon up to 20.22% improvement in the four-week prediction horizon, pointing to the strong predictive power of our model in the longer prediction horizons.
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spelling pubmed-85760472021-11-19 Spatiotemporal prediction of COVID-19 cases using inter- and intra-county proxies of human interactions Vahedi, Behzad Karimzadeh, Morteza Zoraghein, Hamidreza Nat Commun Article Measurements of human interaction through proxies such as social connectedness or movement patterns have proved useful for predictive modeling of COVID-19, which is a challenging task, especially at high spatial resolutions. In this study, we develop a Spatiotemporal autoregressive model to predict county-level new cases of COVID-19 in the coterminous US using spatiotemporal lags of infection rates, human interactions, human mobility, and socioeconomic composition of counties as predictive features. We capture human interactions through 1) Facebook- and 2) cell phone-derived measures of connectivity and human mobility, and use them in two separate models for predicting county-level new cases of COVID-19. We evaluate the model on 14 forecast dates between 2020/10/25 and 2021/01/24 over one- to four-week prediction horizons. Comparing our predictions with a Baseline model developed by the COVID-19 Forecast Hub indicates an average 6.46% improvement in prediction Mean Absolute Errors (MAE) over the two-week prediction horizon up to 20.22% improvement in the four-week prediction horizon, pointing to the strong predictive power of our model in the longer prediction horizons. Nature Publishing Group UK 2021-11-08 /pmc/articles/PMC8576047/ /pubmed/34750353 http://dx.doi.org/10.1038/s41467-021-26742-6 Text en © The Author(s) 2021 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Vahedi, Behzad
Karimzadeh, Morteza
Zoraghein, Hamidreza
Spatiotemporal prediction of COVID-19 cases using inter- and intra-county proxies of human interactions
title Spatiotemporal prediction of COVID-19 cases using inter- and intra-county proxies of human interactions
title_full Spatiotemporal prediction of COVID-19 cases using inter- and intra-county proxies of human interactions
title_fullStr Spatiotemporal prediction of COVID-19 cases using inter- and intra-county proxies of human interactions
title_full_unstemmed Spatiotemporal prediction of COVID-19 cases using inter- and intra-county proxies of human interactions
title_short Spatiotemporal prediction of COVID-19 cases using inter- and intra-county proxies of human interactions
title_sort spatiotemporal prediction of covid-19 cases using inter- and intra-county proxies of human interactions
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8576047/
https://www.ncbi.nlm.nih.gov/pubmed/34750353
http://dx.doi.org/10.1038/s41467-021-26742-6
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