Cargando…

Immune-Related Genes to Construct a Novel Prognostic Model of Breast Cancer: A Chemosensitivity-Based Study

Chemotherapy combined with surgery is effective for patients with breast cancer (BC). However, chemoresistance restricts the effectiveness of BC treatment. Immune microenvironmental changes are of pivotal importance for chemotherapy responses. Thus, we sought to construct and validate an immune prog...

Descripción completa

Detalles Bibliográficos
Autores principales: Deng, Zhi-Min, Hu, Wei, Dai, Fang-Fang, Yuan, Meng-Qin, Hu, Min, Cheng, Yan-Xiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8576363/
https://www.ncbi.nlm.nih.gov/pubmed/34764953
http://dx.doi.org/10.3389/fimmu.2021.734745
_version_ 1784595861968257024
author Deng, Zhi-Min
Hu, Wei
Dai, Fang-Fang
Yuan, Meng-Qin
Hu, Min
Cheng, Yan-Xiang
author_facet Deng, Zhi-Min
Hu, Wei
Dai, Fang-Fang
Yuan, Meng-Qin
Hu, Min
Cheng, Yan-Xiang
author_sort Deng, Zhi-Min
collection PubMed
description Chemotherapy combined with surgery is effective for patients with breast cancer (BC). However, chemoresistance restricts the effectiveness of BC treatment. Immune microenvironmental changes are of pivotal importance for chemotherapy responses. Thus, we sought to construct and validate an immune prognostic model based on chemosensitivity status in BC. Here, immune-related and chemosensitivity-related genes were obtained from GSE25055. Then, univariate analysis was employed to identify prognostic-related gene pairs from the intersection of the two parts of the genes, and modified least absolute shrinkage and selection operator (LASSO) analysis was performed to build a prognostic model. Furthermore, we investigated the efficiency of this model from various perspectives, and further validation was performed using the Cancer Genome Atlas (TCGA) cohorts. We identified seven immune and chemosensitivity-related gene pairs and incorporated them into the Cox regression model. After multilevel validation, the risk model was found to be closely related to the survival rate, various clinical characteristics, tumor mutation burden (TMB) score, immune checkpoints, and response to chemotherapeutic drugs. In addition, the model was verified to exhibit predictive capacity as an independent factor over other candidate clinical features. Notably, the constructed nomogram was more accurate than any single factor. Altogether, the risk score model and the nomogram have potential predictive value and may have important practical implications.
format Online
Article
Text
id pubmed-8576363
institution National Center for Biotechnology Information
language English
publishDate 2021
publisher Frontiers Media S.A.
record_format MEDLINE/PubMed
spelling pubmed-85763632021-11-10 Immune-Related Genes to Construct a Novel Prognostic Model of Breast Cancer: A Chemosensitivity-Based Study Deng, Zhi-Min Hu, Wei Dai, Fang-Fang Yuan, Meng-Qin Hu, Min Cheng, Yan-Xiang Front Immunol Immunology Chemotherapy combined with surgery is effective for patients with breast cancer (BC). However, chemoresistance restricts the effectiveness of BC treatment. Immune microenvironmental changes are of pivotal importance for chemotherapy responses. Thus, we sought to construct and validate an immune prognostic model based on chemosensitivity status in BC. Here, immune-related and chemosensitivity-related genes were obtained from GSE25055. Then, univariate analysis was employed to identify prognostic-related gene pairs from the intersection of the two parts of the genes, and modified least absolute shrinkage and selection operator (LASSO) analysis was performed to build a prognostic model. Furthermore, we investigated the efficiency of this model from various perspectives, and further validation was performed using the Cancer Genome Atlas (TCGA) cohorts. We identified seven immune and chemosensitivity-related gene pairs and incorporated them into the Cox regression model. After multilevel validation, the risk model was found to be closely related to the survival rate, various clinical characteristics, tumor mutation burden (TMB) score, immune checkpoints, and response to chemotherapeutic drugs. In addition, the model was verified to exhibit predictive capacity as an independent factor over other candidate clinical features. Notably, the constructed nomogram was more accurate than any single factor. Altogether, the risk score model and the nomogram have potential predictive value and may have important practical implications. Frontiers Media S.A. 2021-10-26 /pmc/articles/PMC8576363/ /pubmed/34764953 http://dx.doi.org/10.3389/fimmu.2021.734745 Text en Copyright © 2021 Deng, Hu, Dai, Yuan, Hu and Cheng https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Immunology
Deng, Zhi-Min
Hu, Wei
Dai, Fang-Fang
Yuan, Meng-Qin
Hu, Min
Cheng, Yan-Xiang
Immune-Related Genes to Construct a Novel Prognostic Model of Breast Cancer: A Chemosensitivity-Based Study
title Immune-Related Genes to Construct a Novel Prognostic Model of Breast Cancer: A Chemosensitivity-Based Study
title_full Immune-Related Genes to Construct a Novel Prognostic Model of Breast Cancer: A Chemosensitivity-Based Study
title_fullStr Immune-Related Genes to Construct a Novel Prognostic Model of Breast Cancer: A Chemosensitivity-Based Study
title_full_unstemmed Immune-Related Genes to Construct a Novel Prognostic Model of Breast Cancer: A Chemosensitivity-Based Study
title_short Immune-Related Genes to Construct a Novel Prognostic Model of Breast Cancer: A Chemosensitivity-Based Study
title_sort immune-related genes to construct a novel prognostic model of breast cancer: a chemosensitivity-based study
topic Immunology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8576363/
https://www.ncbi.nlm.nih.gov/pubmed/34764953
http://dx.doi.org/10.3389/fimmu.2021.734745
work_keys_str_mv AT dengzhimin immunerelatedgenestoconstructanovelprognosticmodelofbreastcancerachemosensitivitybasedstudy
AT huwei immunerelatedgenestoconstructanovelprognosticmodelofbreastcancerachemosensitivitybasedstudy
AT daifangfang immunerelatedgenestoconstructanovelprognosticmodelofbreastcancerachemosensitivitybasedstudy
AT yuanmengqin immunerelatedgenestoconstructanovelprognosticmodelofbreastcancerachemosensitivitybasedstudy
AT humin immunerelatedgenestoconstructanovelprognosticmodelofbreastcancerachemosensitivitybasedstudy
AT chengyanxiang immunerelatedgenestoconstructanovelprognosticmodelofbreastcancerachemosensitivitybasedstudy