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Stain-free identification of tissue pathology using a generative adversarial network to infer nanomechanical signatures

Intraoperative frozen section analysis can be used to improve the accuracy of tumour margin estimation during cancer resection surgery through rapid processing and pathological assessment of excised tissue. Its applicability is limited in some cases due to the additional risks associated with prolon...

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Autores principales: Neary-Zajiczek, Lydia, Essmann, Clara, Rau, Anita, Bano, Sophia, Clancy, Neil, Jansen, Marnix, Heptinstall, Lauren, Miranda, Elena, Gander, Amir, Pawar, Vijay, Fernandez-Reyes, Delmiro, Shaw, Michael, Davidson, Brian, Stoyanov, Danail
Formato: Online Artículo Texto
Lenguaje:English
Publicado: RSC 2021
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8577366/
https://www.ncbi.nlm.nih.gov/pubmed/34913024
http://dx.doi.org/10.1039/d1na00527h
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author Neary-Zajiczek, Lydia
Essmann, Clara
Rau, Anita
Bano, Sophia
Clancy, Neil
Jansen, Marnix
Heptinstall, Lauren
Miranda, Elena
Gander, Amir
Pawar, Vijay
Fernandez-Reyes, Delmiro
Shaw, Michael
Davidson, Brian
Stoyanov, Danail
author_facet Neary-Zajiczek, Lydia
Essmann, Clara
Rau, Anita
Bano, Sophia
Clancy, Neil
Jansen, Marnix
Heptinstall, Lauren
Miranda, Elena
Gander, Amir
Pawar, Vijay
Fernandez-Reyes, Delmiro
Shaw, Michael
Davidson, Brian
Stoyanov, Danail
author_sort Neary-Zajiczek, Lydia
collection PubMed
description Intraoperative frozen section analysis can be used to improve the accuracy of tumour margin estimation during cancer resection surgery through rapid processing and pathological assessment of excised tissue. Its applicability is limited in some cases due to the additional risks associated with prolonged surgery, largely from the time-consuming staining procedure. Our work uses a measurable property of bulk tissue to bypass the staining process: as tumour cells proliferate, they influence the surrounding extra-cellular matrix, and the resulting change in elastic modulus provides a signature of the underlying pathology. In this work we accurately localise atomic force microscopy measurements of human liver tissue samples and train a generative adversarial network to infer elastic modulus from low-resolution images of unstained tissue sections. Pathology is predicted through unsupervised clustering of parameters characterizing the distributions of inferred values, achieving 89% accuracy for all samples based on the nominal assessment (n = 28), and 95% for samples that have been validated by two independent pathologists through post hoc staining (n = 20). Our results demonstrate that this technique could increase the feasibility of intraoperative frozen section analysis for use during resection surgery and improve patient outcomes.
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spelling pubmed-85773662021-12-13 Stain-free identification of tissue pathology using a generative adversarial network to infer nanomechanical signatures Neary-Zajiczek, Lydia Essmann, Clara Rau, Anita Bano, Sophia Clancy, Neil Jansen, Marnix Heptinstall, Lauren Miranda, Elena Gander, Amir Pawar, Vijay Fernandez-Reyes, Delmiro Shaw, Michael Davidson, Brian Stoyanov, Danail Nanoscale Adv Chemistry Intraoperative frozen section analysis can be used to improve the accuracy of tumour margin estimation during cancer resection surgery through rapid processing and pathological assessment of excised tissue. Its applicability is limited in some cases due to the additional risks associated with prolonged surgery, largely from the time-consuming staining procedure. Our work uses a measurable property of bulk tissue to bypass the staining process: as tumour cells proliferate, they influence the surrounding extra-cellular matrix, and the resulting change in elastic modulus provides a signature of the underlying pathology. In this work we accurately localise atomic force microscopy measurements of human liver tissue samples and train a generative adversarial network to infer elastic modulus from low-resolution images of unstained tissue sections. Pathology is predicted through unsupervised clustering of parameters characterizing the distributions of inferred values, achieving 89% accuracy for all samples based on the nominal assessment (n = 28), and 95% for samples that have been validated by two independent pathologists through post hoc staining (n = 20). Our results demonstrate that this technique could increase the feasibility of intraoperative frozen section analysis for use during resection surgery and improve patient outcomes. RSC 2021-09-02 /pmc/articles/PMC8577366/ /pubmed/34913024 http://dx.doi.org/10.1039/d1na00527h Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by/3.0/
spellingShingle Chemistry
Neary-Zajiczek, Lydia
Essmann, Clara
Rau, Anita
Bano, Sophia
Clancy, Neil
Jansen, Marnix
Heptinstall, Lauren
Miranda, Elena
Gander, Amir
Pawar, Vijay
Fernandez-Reyes, Delmiro
Shaw, Michael
Davidson, Brian
Stoyanov, Danail
Stain-free identification of tissue pathology using a generative adversarial network to infer nanomechanical signatures
title Stain-free identification of tissue pathology using a generative adversarial network to infer nanomechanical signatures
title_full Stain-free identification of tissue pathology using a generative adversarial network to infer nanomechanical signatures
title_fullStr Stain-free identification of tissue pathology using a generative adversarial network to infer nanomechanical signatures
title_full_unstemmed Stain-free identification of tissue pathology using a generative adversarial network to infer nanomechanical signatures
title_short Stain-free identification of tissue pathology using a generative adversarial network to infer nanomechanical signatures
title_sort stain-free identification of tissue pathology using a generative adversarial network to infer nanomechanical signatures
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8577366/
https://www.ncbi.nlm.nih.gov/pubmed/34913024
http://dx.doi.org/10.1039/d1na00527h
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